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.vcf has fewer tokens than expected error #5
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Hi were you able to find a solution to this? |
Have you found a solution to this problem? I get an error too... |
I met the same problem and solved it today. Look at the 217969 line (the line number reported in the error) of your vcf file, this line may not be intact. |
#17 |
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您好,请问您是如何解决的,我也遇到了相同的报错。谢谢! |
Maybe you can try to check the integrity of the file. .gz should have this function. As you know, connection between Asia and US is vulnerable, resulting in me running into the same problem. I rent an overseas server in south America, downloaded the file, and transferred it back to Asia through scp. BTW, don't forget to execute a md5 check. |
In part 2, when we convert from vcf to Plink format, I get an error:
![image](https://user-images.githubusercontent.com/25188258/67125920-b54d7f00-f1aa-11e9-8cd9-232492122152.png)
Any advice to get around this? I end up with temporary files because of this & the rest of the tutorial is not functioning the way it should.
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