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CHANGELOG.md

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0.0.7

  • This update supports some operations on amino acid sequences.
  • Added length() method to AminoAcidSequence.
  • Added UtilAminoAcidSearch class.
  • Added UtilCompareAminoAcid class.
  • Added compareSingle method to UtilCompareNucleotide.
  • Split Fasta class search method to UtilFastaSearch class.
  • The Util_XXX_SearchRepeat class and Util_XXX_SearchPattern class have been merged.
  • The types of corresponding amino acids have increased.
  • Fuzzy search enabled except for UtilFastaSearch. For example, LXLXLXXN is valid in the search sequence, where X is any amino acid.

0.0.6

  • Revised data structure. Reduced memory usage and storage size.
  • Fixed missing references.
  • Added FASTA format converter.
  • Added sequence search utils.
  • Added subSeq and subSeqNonInfo to NucleotideSequence and AminoAcidSequence.
  • Fixed description.

0.0.5

  • Revised data structure. Reduced memory usage and storage size.

0.0.4

  • Added add method and + operator to NucleotideSequence and AminoAcidSequence.

0.0.3

  • Updated description.

0.0.2

  • I've made significant changes to make the specs more computationally friendly than before.

0.0.1

  • Initial release.