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fx_template_2019_case.sh
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fx_template_2019_case.sh
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# header of ic fx-namelist
cat << EOF > fx_prepare_ic.nl
!##############################################
! Regrid input files to ICON-1 grid
!##############################################
! fish
&RunSpecification
strict_usage = .true.
verbosity = "high"
additional_diagnostic = .false.
additional_profiling = .true.
n_ompthread_total = 12
n_ompthread_collect = 1
n_ompthread_generate = 1
/
EOF
# copy header also for bc fx-namelist
cp fx_prepare_ic.nl fx_prepare_bc.nl
# content for ic regridding
cat << EOF >> fx_prepare_ic.nl
!----------------------------------------------------------------------------------
! COSMO data is decoded with the help of dictionary_cosmo, and encoded as ICON data
! using dictionary_icon. Therefore, both dictionaries have to be specified.
!----------------------------------------------------------------------------------
&GlobalResource
dictionary = "/project/s83c/fieldextra/tsa/resources/dictionary_icon.txt",
"/project/s83c/fieldextra/tsa/resources/dictionary_cosmo.txt"
grib_definition_path = "/project/s83c/fieldextra/tsa/resources/eccodes_definitions_cosmo",
"/project/s83c/fieldextra/tsa/resources/eccodes_definitions_vendor"
grib2_sample = "/project/s83c/fieldextra/tsa/resources/eccodes_samples/COSMO_GRIB2_default.tmpl"
icon_grid_description = "${grid_file}"
/
!----------------------------------------------------------------------------------
! COSMO is set as the default_model_name here, but since in_model_name and
! out_model_name are explicitely set in the I/O blocks, the default_model_name is
! actually not used in this example.
!----------------------------------------------------------------------------------
&GlobalSettings
default_model_name = "cosmo"
default_out_type_stdlongitude = .true.
/
!----------------------------------------------------------------------------------
! The specification of the wilting_point and the field_capacity for the soil_types of
! the COSMO model is required for the computation of the soil moisture index.
!----------------------------------------------------------------------------------
&ModelSpecification
model_name = "cosmo"
earth_axis_large = 6371229.
earth_axis_small = 6371229.
soil_types(:)%code = 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 ,
soil_types(:)%name = "ice", "rock", "sand", "sandy_loam", "loam", "loamy_clay", "clay", "peat", "sea", "sea_ice",
soil_types(:)%wilting_point = 0. , 0. , 0.042 , 0.100 , 0.110 , 0.185 , 0.257 , 0.265 , 0. , 0. ,
soil_types(:)%field_capacity = 0. , 0. , 0.196 , 0.260 , 0.340 , 0.370 , 0.463 , 0.763 , 0. , 0. ,
/
!----------------------------------------------------------------------------------
! Radial basis function interpolation will be used as regrid_method to the ICON triangular
! grid for all fields.
!----------------------------------------------------------------------------------
&ModelSpecification
model_name = "icon"
snow_levels_positive = "up"
earth_axis_large = 6371229.
earth_axis_small = 6371229.
regrid_method = "__ALL__:icontools,rbf"
/
!----------------------------------------------------------------------------------
! Use INCORE storage to tag the COSMO mass point grid for the re-gridding of U and V
!----------------------------------------------------------------------------------
&Process
in_file = "/store/s83/swester/teamx/tdf_2019091212/orig_laf/laf2019091212"
in_model_name="cosmo"
out_type = "INCORE"
/
&Process in_field = "HSURF", tag="GRID_cosmo" /
!----------------------------------------------------------------------------------
! Read all necessary input from the KENDA-1 analysis as COSMO data.
! Re-grid U and V on input, and rotate them with respect to the geographical reference system.
! Set T_ICE to 0.
! Create FR_ICE from FR_LAND, and set the field to 0.
! Data will be re-gridded on output to the cell subgrid of the ICON triangular grid
! Note that out_model_name
! is set in the programme before the re-gridding takes place. Thus the default regrid_method that
! is defined in the ModelSpecification of ICON is used (and must be defined there).
!----------------------------------------------------------------------------------
&Process
in_file = "/store/s83/swester/teamx/tdf_2019091212/orig_laf/laf2019091212"
in_model_name="cosmo"
in_regrid_target="GRID_cosmo", in_regrid_method="average,square,0.9"
out_regrid_target = "icon_grid,cell,${grid_file}"
out_regrid_method = "default"
out_model_name = "icon"
!out_file = "${wd}/laf20${date}.grb2",
!out_type = "GRIB2"
out_file = "${wd}/laf20${date}.nc",
out_type = "NETCDF", out_type_ncaspect="icon", out_type_nousetag=.true., out_type_nccoordbnds=.true.
out_mode_smi_clipped=.t.
/
&Process in_field = "W_SO" /
&Process in_field = "SOILTYP" /
&Process in_field="U", levmin=1, levmax=80, regrid=.t., poper="n2geog" /
&Process in_field="V", levmin=1, levmax=80, regrid=.t., poper="n2geog" /
&Process in_field="HHL", level_class="k_half", levmin=1, levmax=81 /
&Process in_field="W", levmin=1, levmax=81 /
&Process in_field="T", levmin=1, levmax=80 /
&Process in_field="P", levmin=1, levmax=80 /
&Process in_field="QV", levmin=1, levmax=80 /
&Process in_field="QC", levmin=1, levmax=80 /
&Process in_field="QI", levmin=1, levmax=80 /
&Process in_field="QR", levmin=1, levmax=80 /
&Process in_field="QS", levmin=1, levmax=80 /
&Process in_field="QG", levmin=1, levmax=80 /
&Process in_field="T_G" /
&Process in_field="T_MNW_LK" /
&Process in_field="T_WML_LK" /
&Process in_field="H_ML_LK" /
&Process in_field="T_BOT_LK" /
&Process in_field="C_T_LK" /
&Process in_field="QV_S" /
&Process in_field="T_SO" /
&Process in_field="FRESHSNW" /
&Process in_field="RHO_SNOW" /
&Process in_field="T_SNOW" /
&Process in_field="W_SNOW" /
&Process in_field="W_I" /
&Process in_field="Z0" /
&Process in_field="FR_LAND" /
!-------------
! Create or compute missing fields
!-------------
! 1. Part: Take as is
&Process tmp1_field="U", /
&Process tmp1_field="V", /
&Process tmp1_field="W", /
&Process tmp1_field="T", /
&Process tmp1_field="P", /
&Process tmp1_field="QV", /
&Process tmp1_field="QC", /
&Process tmp1_field="QI", /
&Process tmp1_field="QR", /
&Process tmp1_field="QS", /
&Process tmp1_field="QG", /
&Process tmp1_field="T_G" /
&Process tmp1_field="T_MNW_LK" /
&Process tmp1_field="T_WML_LK" /
&Process tmp1_field="H_ML_LK" /
&Process tmp1_field="T_BOT_LK" /
&Process tmp1_field="C_T_LK" /
&Process tmp1_field="QV_S" /
&Process tmp1_field="T_SO" /
&Process tmp1_field="W_I" /
&Process tmp1_field="Z0" /
&Process tmp1_field="FRESHSNW" /
&Process tmp1_field="T_SNOW" /
&Process tmp1_field="W_SNOW" /
&Process tmp1_field="H_SNOW" /
&Process tmp1_field="RHO_SNOW" /
! 2. Part: Some calculations
&Process tmp1_field="HHL", new_field_id="HEIGHT" /
&Process tmp1_field="SMI" /
&Process tmp1_field="W_SO", tag="W_SO_clone" poper="replace_all,0.", new_field_id="W_SO_ICE" /
&Process tmp1_field="FR_LAND", tag="FR_LAND_clone_1", poper="replace_all,0.", new_field_id="FR_ICE" /
&Process tmp1_field="H_SNOW", tag="H_SNOW_clone_1", poper="replace_all,0.", new_field_id="H_ICE" /
&Process tmp1_field="T_G", tag="T_G_clone_1", poper="replace_all,273.15", new_field_id="T_ICE" /
!----------------------------------------------------------------------------------
! Compute the SMI, and filter W_SO and SOILTYP.
!----------------------------------------------------------------------------------
&Process out_field="HEIGHT", level_class="k_half", levmin=1, levmax=81 /
&Process out_field="U", levmin=1, levmax=80 /
&Process out_field="V", levmin=1, levmax=80 /
&Process out_field="W", levmin=1, levmax=81 /
&Process out_field="T", levmin=1, levmax=80 /
&Process out_field="P", levmin=1, levmax=80 /
&Process out_field="QV", levmin=1, levmax=80 /
&Process out_field="QC", levmin=1, levmax=80 /
&Process out_field="QI", levmin=1, levmax=80 /
&Process out_field="QR", levmin=1, levmax=80 /
&Process out_field="QS", levmin=1, levmax=80 /
&Process out_field="QG", levmin=1, levmax=80 /
&Process out_field="T_G" /
&Process out_field="FR_ICE" /
&Process out_field="T_ICE" /
&Process out_field="H_ICE" /
&Process out_field="T_MNW_LK" /
&Process out_field="T_WML_LK" /
&Process out_field="H_ML_LK" /
&Process out_field="T_BOT_LK" /
&Process out_field="C_T_LK" /
&Process out_field="QV_S" /
&Process out_field="T_SO" /
&Process out_field="SMI", poper="replace_undef,0." /
&Process out_field="W_SO_ICE" /
&Process out_field="FRESHSNW" /
&Process out_field="RHO_SNOW" /
&Process out_field="T_SNOW" /
&Process out_field="W_SNOW" /
&Process out_field="H_SNOW" /
&Process out_field="W_I" /
&Process out_field="Z0" /
EOF
# -----------------------------------------------
# boundary conditions fieldextra namelist
# -----------------------------------------------
cat << EOF >> fx_prepare_bc.nl
!----------------------------------------------------------------------------------
! COSMO data is decoded with the help of dictionary_cosmo, and encoded as ICON data
! using dictionary_icon. Therefore, both dictionaries have to be specified.
!----------------------------------------------------------------------------------
&GlobalResource
dictionary = "/project/s83c/fieldextra/tsa/resources/dictionary_icon.txt",
"/project/s83c/fieldextra/tsa/resources/dictionary_ifs.txt"
grib_definition_path = "/project/s83c/fieldextra/tsa/resources/eccodes_definitions_cosmo",
"/project/s83c/fieldextra/tsa/resources/eccodes_definitions_vendor"
grib2_sample = "/project/s83c/fieldextra/tsa/resources/eccodes_samples/COSMO_GRIB2_default.tmpl"
icon_grid_description = "${grid_file}"
"${lateral_boundary_grid_file}"
/
!----------------------------------------------------------------------------------
! ICON is set as the default_model_name here, but since in_model_name and
! out_model_name are explicitely set in the I/O blocks, the default_model_name is
! actually not used in this example.
!----------------------------------------------------------------------------------
&GlobalSettings
default_model_name = "ifs"
default_out_type_stdlongitude = .true.
/
&ModelSpecification
model_name = "ifs"
earth_axis_large = 6371229.
earth_axis_small = 6371229.
regrid_method = "__ALL__:icontools,rbf"
/
!----------------------------------------------------------------------------------
! Read all necessary IFS input fields.
! Rotate U and V, such that they refer to the geographical reference system.
! Scalar fields are re-gridded on output to the cell subgrid of the ICON triangular grid
! Note that out_model_name is set in the programme before the re-gridding takes place. Thus the default
! regrid_method that is defined in the ModelSpecification of ICON is used (and must be defined there).
! A) for IFS analysis field
!----------------------------------------------------------------------------------
&Process
in_file = "/store/s83/swester/teamx/tdf_20${date}/orig_ifs/eas20${date}"
out_type="INCORE"
/
&Process in_field = "FIS" /
&Process
in_type="INCORE"
out_regrid_target = "icon_grid,multiple,${lateral_boundary_grid_file}"
out_regrid_method = "default"
out_file = "${wd}/efsf00000000_lbc.nc",
out_type = "NETCDF", out_type_ncaspect = "icon", out_type_ncnodegendim=.TRUE.
/
&Process in_field = "FIS", set_reference_date=20${date} /
&Process
in_file = "/store/s83/swester/teamx/tdf_20${date}/orig_ifs/eas20${date}"
out_regrid_target = "icon_grid,multiple,${lateral_boundary_grid_file}"
out_regrid_method = "default"
out_file = "${wd}/efsf00000000_lbc.nc",
out_type = "NETCDF", out_type_ncaspect="icon", out_type_ncnodegendim=.true.
/
!&Process in_field = "OMEGA", tag="W", levmin=1, levmax=137 /
&Process in_field = "T", levmin=1, levmax=137 /
&Process in_field = "QV", levmin=1, levmax=137 /
&Process in_field = "QC", levmin=1, levmax=137 /
&Process in_field = "QI", levmin=1, levmax=137 /
&Process in_field = "QR", levmin=1, levmax=137 /
&Process in_field = "QS", levmin=1, levmax=137 /
&Process in_field = "U", levmin=1, levmax=137, poper="n2geog" /
&Process in_field = "V", levmin=1, levmax=137, poper="n2geog" /
&Process in_field = "LNSP" /
!&Process out_field = "OMEGA", tag="W", levmin=1, levmax=137 /
&Process out_field = "T", levmin=1, levmax=137 /
&Process out_field = "QV", levmin=1, levmax=137 /
&Process out_field = "QC", levmin=1, levmax=137 /
&Process out_field = "QI", levmin=1, levmax=137 /
&Process out_field = "QR", levmin=1, levmax=137 /
&Process out_field = "QS", levmin=1, levmax=137 /
&Process out_field = "U", levmin=1, levmax=137, regrid_operator="U,V>VN" /
&Process out_field = "V", levmin=1, levmax=137, regrid_operator="U,V>VN" /
&Process out_field = "LNSP", tag="LNPS" /
&Process out_field = "FIS", tag="GEOP_ML" /
! B) for IFS forecast fields
&Process
in_type="INCORE"
out_regrid_target = "icon_grid,multiple,${lateral_boundary_grid_file}"
out_regrid_method = "default"
out_file = "${wd}/efsf<DDHH>0000_lbc.nc",
out_type = "NETCDF", out_type_ncaspect = "icon", out_type_ncnodegendim=.TRUE.
tstart=1, tstop=${leadtime}
/
&Process in_field = "FIS", set_reference_date=20${date} /
&Process
in_file = "/store/s83/swester/teamx/tdf_20${date}/orig_ifs/efsf<DDHH>0000"
out_regrid_target = "icon_grid,multiple,${lateral_boundary_grid_file}"
out_regrid_method = "default"
out_file = "${wd}/efsf<DDHH>0000_lbc.nc",
out_type = "NETCDF", out_type_ncaspect = "icon", out_type_ncnodegendim=.TRUE.
tstart=1, tstop=${leadtime}
/
!&Process in_field = "OMEGA", tag="W", levmin=1, levmax=137 /
&Process in_field = "T", levmin=1, levmax=137 /
&Process in_field = "QV", levmin=1, levmax=137 /
&Process in_field = "QC", levmin=1, levmax=137 /
&Process in_field = "QI", levmin=1, levmax=137 /
&Process in_field = "QR", levmin=1, levmax=137 /
&Process in_field = "QS", levmin=1, levmax=137 /
&Process in_field = "U", levmin=1, levmax=137, poper="n2geog" /
&Process in_field = "V", levmin=1, levmax=137, poper="n2geog" /
&Process in_field = "LNSP" /
!&Process out_field = "OMEGA", tag="W", levmin=1, levmax=137 /
&Process out_field = "T", levmin=1, levmax=137 /
&Process out_field = "QV", levmin=1, levmax=137 /
&Process out_field = "QC", levmin=1, levmax=137 /
&Process out_field = "QI", levmin=1, levmax=137 /
&Process out_field = "QR", levmin=1, levmax=137 /
&Process out_field = "QS", levmin=1, levmax=137 /
&Process out_field = "U", levmin=1, levmax=137, regrid_operator="U,V>VN" /
&Process out_field = "V", levmin=1, levmax=137, regrid_operator="U,V>VN" /
&Process out_field = "LNSP", tag="LNPS" /
&Process out_field = "FIS", tag="GEOP_ML" /
EOF