From 43acc845ef1d2752b2c3266d259539236e4ae77b Mon Sep 17 00:00:00 2001 From: Christopher Henry Date: Thu, 21 Nov 2024 12:06:24 -0600 Subject: [PATCH] Adding biochemistry to deploy --- Dockerfile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 4f0673c..a23225e 100755 --- a/Dockerfile +++ b/Dockerfile @@ -37,10 +37,12 @@ RUN pip install deepdiff RUN pip install h5py RUN echo '34' >/dev/null && pip install --use-deprecated=legacy-resolver git+https://github.com/cshenry/ModelSEEDpy.git -#RUN echo '11' >/dev/null && pip install git+https://github.com/cshenry/cobrakbase.git@f0b3aa300fb153fc83b2fd5e83be231fc6992fae RUN echo '30' >/dev/null && mkdir deps && cd deps && \ git clone --branch main https://github.com/cshenry/KBBaseModules.git +RUN echo '1' >/dev/null && mkdir deps && cd deps && \ + git clone https://github.com/ModelSEED/ModelSEEDDatabase.git && \ + cd ModelSEEDDatabase && git checkout 2f5da32e26e3eed8181825ceebe1a45997204bcb RUN echo '1' >/dev/null && cd deps && \ git clone https://github.com/cshenry/cobrakbase.git && \ cd cobrakbase && git checkout f0b3aa300fb153fc83b2fd5e83be231fc6992fae