diff --git a/.github/workflows/documentation.yml b/.github/workflows/documentation.yml index dce63c8..cb82002 100644 --- a/.github/workflows/documentation.yml +++ b/.github/workflows/documentation.yml @@ -3,7 +3,7 @@ name: Documentation on: push: branches: - - master # update to match your development branch (master, main, dev, trunk, ...) + - main tags: '*' pull_request: diff --git a/README.md b/README.md index f87fb2b..4a4648a 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,7 @@ # CHMMera.jl +[![Documentation](https://img.shields.io/badge/docs-latest-blue.svg)](https://murrellgroup.github.io/CHMMera.jl/) +[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://opensource.org/license/MIT) [![Coverage](https://codecov.io/gh/MurrellGroup/CHMMera.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/MurrellGroup/CHMMera.jl) CHMMera.jl is a method for reference-based detection of chimeric DNA sequences. diff --git a/docs/src/index.md b/docs/src/index.md index f355a70..bd5a5c9 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -1,5 +1,8 @@ # CHMMera.jl +[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://opensource.org/license/MIT) +[![Coverage](https://codecov.io/gh/MurrellGroup/CHMMera.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/MurrellGroup/CHMMera.jl) + CHMMera.jl is a method for reference-based detection of chimeric DNA sequences. Chimera detection is performed using a Hidden Markov Model (HMM) that models sequences as being generated from a single reference with mutations or from multiple references with mutations. We implemented two approaches to determine mutation rates: