r_notebook.yaml

name: r_notebook
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - r-base>=4.2
  - jupyterlab>3
  - ipywidgets>=7.6
  - nbconvert
  - pandas
  - r-irkernel
  - r-tidyverse
  - bioconductor-ggtree
  - bioconductor-ggtreeextra
  - r-plotly
  - r-ggstar
  - r-repr
  - r-irdisplay
  - r-pbdzmq
  - r-devtools
  - r-phytools
  - pandoc
  - rpy2
  - jupyter_contrib_nbextensions
  - r-svglite
  - svgutils
  - clustalo
  - iqtree
  - seqkit
  - trimal
  - r-ggalt
  - bioconductor-iranges
  - pip
  - pip:
    - networkx
    - biopython
    - pyarrow