diff --git a/assets/figures/Figure_S6/Figure_S6.png b/assets/figures/Figure_S6/Figure_S6.png index 9211412..3f8e32d 100644 Binary files a/assets/figures/Figure_S6/Figure_S6.png and b/assets/figures/Figure_S6/Figure_S6.png differ diff --git a/assets/figures/Figure_S6/Figure_S6.svg b/assets/figures/Figure_S6/Figure_S6.svg index 1c055bb..9b0a794 100644 --- a/assets/figures/Figure_S6/Figure_S6.svg +++ b/assets/figures/Figure_S6/Figure_S6.svg @@ -4,7 +4,7 @@ - + @@ -27,228 +27,228 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - Saccharopolyspora soli + + + Saccharopolyspora sp. - - - Saccharopolyspora aridisoli + + + Saccharopolyspora terrae - - - Saccharopolyspora spinosa + + + Saccharopolyspora rhizosphaerae - - - Saccharopolyspora dendranthemae + + + Saccharopolyspora pogona - - - Saccharopolyspora phatthalungensis + + + Saccharopolyspora aridisoli - - - Saccharopolyspora hordei + + + Saccharopolyspora hirsuta - - - Saccharopolyspora terrae + + + Saccharopolyspora hordei - + - Saccharopolyspora rhizosphaerae + Saccharopolyspora shandongensis + + + + Saccharopolyspora gloriosae - - - Saccharopolyspora sp. + + + Saccharopolyspora rosea - - - Saccharopolyspora rectivirgula + + + Saccharopolyspora phatthalungensis - - - Saccharopolyspora shandongensis + + + Saccharopolyspora karakumensis - - - Saccharopolyspora endophytica + + + Saccharopolyspora antimicrobica - - - Saccharopolyspora erythraea + + + Saccharopolyspora erythraea - + - Saccharopolyspora gloriosae + Saccharopolyspora kobensis - - - Saccharopolyspora antimicrobica - - + - Saccharopolyspora subtropica + Saccharopolyspora soli - + - Saccharopolyspora karakumensis + Saccharopolyspora flava - - - Saccharopolyspora rosea + + + Saccharopolyspora subtropica - + + + Saccharopolyspora spinosa + + - Saccharopolyspora elongata + Saccharopolyspora dendranthemae - - - Saccharopolyspora hirsuta + + + Saccharopolyspora endophytica - - - Saccharopolyspora pogona + + + Saccharopolyspora elongata - + Saccharopolyspora gregorii - - - Saccharopolyspora flava - - - - Saccharopolyspora kobensis + + + Saccharopolyspora rectivirgula - - Saccharopolyspora jiangxiensis + + Saccharopolyspora hirsuta - - - Saccharopolyspora subtropica + + + Saccharopolyspora_D erythraea - - - Saccharopolyspora_D erythraea_A + + + Saccharopolyspora sp. - - - Saccharopolyspora pogona + + + Saccharopolyspora rectivirgula - + - Saccharopolyspora phatthalungensis + Saccharopolyspora_D erythraea_A - + - Saccharopolyspora sp015209505 + Saccharopolyspora rhizosphaerae - - - Saccharopolyspora_D erythraea + + + Saccharopolyspora flava - + - Saccharopolyspora_C gloriosae + Saccharopolyspora_C sp016526145 - - - Saccharopolyspora hirsuta + + + Saccharopolyspora spinosa - + - Saccharopolyspora rhizosphaerae - - - - Saccharopolyspora antimicrobica + Saccharopolyspora dendranthemae - - - Saccharopolyspora rectivirgula + + + Saccharopolyspora endophytica - - - Saccharopolyspora endophytica + + + Saccharopolyspora phatthalungensis - - - Saccharopolyspora_C sp. + + + Saccharopolyspora shandongensis - + - Saccharopolyspora_C sp016526145 + Saccharopolyspora subtropica - + + + Saccharopolyspora_C sp. + + - Saccharopolyspora flava + Saccharopolyspora_C gloriosae - - Saccharopolyspora dendranthemae - - - - Saccharopolyspora sp004348985 + + Saccharopolyspora pogona - - - Saccharopolyspora spinosa + + + Saccharopolyspora sp004348445 - - - Saccharopolyspora sp. + + + Saccharopolyspora sp015209505 - + - Saccharopolyspora sp004348445 + Saccharopolyspora sp004348985 - + - Saccharopolyspora shandongensis + Saccharopolyspora hordei - - - Saccharopolyspora hordei + + + Saccharopolyspora jiangxiensis + + + + Saccharopolyspora antimicrobica - + @@ -266,8 +266,8 @@ - - + + - Year + Year - Number of Genomes + Number of Genomes - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - + + 92 - 93 + 93 94 - 95 + 95 96 - 97 + 97 98 - 99 + 99 100 - 101 + 101 @@ -529,76 +528,74 @@ - - - - - - + + + + + 0 - 1 - 2 - 3 - 4 - 5 - 6 - 7 + 1 + 2 + 3 + 4 + 5 + 6 - Contamination (%) + Contamination (%) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + @@ -615,8 +612,8 @@ - - + + - N50 (cutoff = 5000000) + N50 (cutoff = 5000000) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/figures/Figure_S6/Figure_S6a.svg b/assets/figures/Figure_S6/Figure_S6a.svg index e41423a..5930c40 100644 --- a/assets/figures/Figure_S6/Figure_S6a.svg +++ b/assets/figures/Figure_S6/Figure_S6a.svg @@ -1 +1 @@ -2007200820092010201120122013201420152016201720182019202020212022Year051015202530354045Number of Genomes \ No newline at end of file +2007200820092010201120122013201420152016201720182019202020212022Year051015202530354045Number of Genomes \ No newline at end of file diff --git a/assets/figures/Figure_S6/Figure_S6b.svg b/assets/figures/Figure_S6/Figure_S6b.svg index f899335..694f86b 100644 --- a/assets/figures/Figure_S6/Figure_S6b.svg +++ b/assets/figures/Figure_S6/Figure_S6b.svg @@ -1 +1 @@ -9293949596979899100101Completeness (%)01234567Contamination (%) \ No newline at end of file +9293949596979899100101Completeness (%)0123456Contamination (%) \ No newline at end of file diff --git a/assets/figures/Figure_S6/Figure_S6c.svg b/assets/figures/Figure_S6/Figure_S6c.svg index d34dded..08e222a 100644 --- a/assets/figures/Figure_S6/Figure_S6c.svg +++ b/assets/figures/Figure_S6/Figure_S6c.svg @@ -1 +1 @@ -Saccharopolyspora soliSaccharopolyspora aridisoliSaccharopolyspora spinosaSaccharopolyspora dendranthemaeSaccharopolyspora phatthalungensisSaccharopolyspora hordeiSaccharopolyspora terraeSaccharopolyspora rhizosphaeraeSaccharopolyspora sp.Saccharopolyspora rectivirgulaSaccharopolyspora shandongensisSaccharopolyspora endophyticaSaccharopolyspora erythraeaSaccharopolyspora gloriosaeSaccharopolyspora antimicrobicaSaccharopolyspora subtropicaSaccharopolyspora karakumensisSaccharopolyspora roseaSaccharopolyspora elongataSaccharopolyspora hirsutaSaccharopolyspora pogonaSaccharopolyspora gregoriiSaccharopolyspora flavaSaccharopolyspora kobensis Saccharopolyspora jiangxiensis Saccharopolyspora subtropica Saccharopolyspora_D erythraea_A Saccharopolyspora pogona Saccharopolyspora phatthalungensis Saccharopolyspora sp015209505 Saccharopolyspora_D erythraea Saccharopolyspora_C gloriosae Saccharopolyspora hirsuta Saccharopolyspora rhizosphaerae Saccharopolyspora antimicrobica Saccharopolyspora rectivirgula Saccharopolyspora endophytica Saccharopolyspora_C sp. Saccharopolyspora_C sp016526145 Saccharopolyspora flava Saccharopolyspora dendranthemae Saccharopolyspora sp004348985 Saccharopolyspora spinosa Saccharopolyspora sp. Saccharopolyspora sp004348445 Saccharopolyspora shandongensis Saccharopolyspora hordei \ No newline at end of file +Saccharopolyspora sp.Saccharopolyspora terraeSaccharopolyspora rhizosphaeraeSaccharopolyspora pogonaSaccharopolyspora aridisoliSaccharopolyspora hirsutaSaccharopolyspora hordeiSaccharopolyspora shandongensisSaccharopolyspora gloriosaeSaccharopolyspora roseaSaccharopolyspora phatthalungensisSaccharopolyspora karakumensisSaccharopolyspora antimicrobicaSaccharopolyspora erythraeaSaccharopolyspora kobensisSaccharopolyspora soliSaccharopolyspora flavaSaccharopolyspora subtropicaSaccharopolyspora spinosaSaccharopolyspora dendranthemaeSaccharopolyspora endophyticaSaccharopolyspora elongataSaccharopolyspora gregoriiSaccharopolyspora rectivirgula Saccharopolyspora hirsuta Saccharopolyspora_D erythraea Saccharopolyspora sp. Saccharopolyspora rectivirgula Saccharopolyspora_D erythraea_A Saccharopolyspora rhizosphaerae Saccharopolyspora flava Saccharopolyspora_C sp016526145 Saccharopolyspora spinosa Saccharopolyspora dendranthemae Saccharopolyspora endophytica Saccharopolyspora phatthalungensis Saccharopolyspora shandongensis Saccharopolyspora subtropica Saccharopolyspora_C sp. Saccharopolyspora_C gloriosae Saccharopolyspora pogona Saccharopolyspora sp004348445 Saccharopolyspora sp015209505 Saccharopolyspora sp004348985 Saccharopolyspora hordei Saccharopolyspora jiangxiensis Saccharopolyspora antimicrobica \ No newline at end of file diff --git a/assets/figures/Figure_S6/Figure_S6d.svg b/assets/figures/Figure_S6/Figure_S6d.svg index ff92217..51fa344 100644 --- a/assets/figures/Figure_S6/Figure_S6d.svg +++ b/assets/figures/Figure_S6/Figure_S6d.svg @@ -1 +1 @@ -10k20k100k200k1M2M10M20M100MN50 (cutoff = 5000000)100m200m1210201002001kContigs (cutoff = 50) \ No newline at end of file +10k20k100k200k1M2M10M20M100MN50 (cutoff = 5000000)100m200m1210201002001kContigs (cutoff = 50) \ No newline at end of file