diff --git a/_includes/ome_tiff/lif2ometiff.md b/_includes/ome_tiff/convert_to_ometiff.md similarity index 83% rename from _includes/ome_tiff/lif2ometiff.md rename to _includes/ome_tiff/convert_to_ometiff.md index 32694e8f..855daa4e 100644 --- a/_includes/ome_tiff/lif2ometiff.md +++ b/_includes/ome_tiff/convert_to_ometiff.md @@ -1,4 +1,4 @@ -

Convert LIF to OME-TIFF

+

Convert an image file to OME-TIFF

- Download the Leica image file [image.lif](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.lif) - Open the file diff --git a/_includes/ome_tiff/lif2ometiff_fiji_ngff-converter.md b/_includes/ome_tiff/convert_to_ometiff_ngff-converter.md similarity index 100% rename from _includes/ome_tiff/lif2ometiff_fiji_ngff-converter.md rename to _includes/ome_tiff/convert_to_ometiff_ngff-converter.md diff --git a/_includes/ome_tiff/inspect_metadata.md b/_includes/ome_tiff/open_ometiff.md similarity index 76% rename from _includes/ome_tiff/inspect_metadata.md rename to _includes/ome_tiff/open_ometiff.md index 5c89f9a5..534e3121 100644 --- a/_includes/ome_tiff/inspect_metadata.md +++ b/_includes/ome_tiff/open_ometiff.md @@ -1,4 +1,4 @@ -

Inspect OME-TIFF metadata

+

Inspect OME-TIFF metadata

- Download the OME-TIFF image file [xy_xyc__two_images.ome.tiff](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.ome.tiff) - Open the OME-XML metadata of this file and try to understand it diff --git a/_includes/ome_tiff/inspect_metadata_fiji_bioformats.md b/_includes/ome_tiff/open_ometiff_fiji_bioformats.md similarity index 100% rename from _includes/ome_tiff/inspect_metadata_fiji_bioformats.md rename to _includes/ome_tiff/open_ometiff_fiji_bioformats.md diff --git a/_includes/ome_tiff/save_ometiff.md b/_includes/ome_tiff/save_ometiff.md new file mode 100644 index 00000000..ab40f4ec --- /dev/null +++ b/_includes/ome_tiff/save_ometiff.md @@ -0,0 +1,6 @@ +

Save... OME-TIFF metadata

+ +- Download the OME-TIFF image file [xy_xyc__two_images.ome.tiff](https://github.com/NEUBIAS/training-resources/raw/master/image_data/xy_xyc__two_images.ome.tiff) +- Open the OME-XML metadata of this file and try to understand it +- Interesting entries entail: + - `PixelPhysicalSize` diff --git a/courses/2024_manual_image_measurements.md b/courses/2025_02_manual_measurements.md similarity index 100% rename from courses/2024_manual_image_measurements.md rename to courses/2025_02_manual_measurements.md