diff --git a/.gitignore b/.gitignore index 015a0292..e70f568e 100644 --- a/.gitignore +++ b/.gitignore @@ -58,6 +58,7 @@ inst/examples/nonmem/backup_* inst/examples/nonmem/*\.ext inst/examples/nonmem/*\.phi inst/examples/nonmem/xgxr001dir/backup_* +tests_manual/testthat/testOutput /doc/ /Meta/ *\.pnm diff --git a/devel/todo.org b/devel/todo.org index 32634033..43873feb 100644 --- a/devel/todo.org +++ b/devel/todo.org @@ -11,7 +11,7 @@ "default" as an actual param value. *** DONE Allow for say input.txt/output.txt **** NMtransInput -*** TODO Support a drop argument +*** TODO [#B] Support a drop argument It has been initiated in the code. I believe it can be finished after the translate part. The colnames table is the trickier part to update. *** DONE Support for return as tibble or whatever diff --git a/devel/vignettes_compile.R b/devel/vignettes_compile.R new file mode 100644 index 00000000..72952827 --- /dev/null +++ b/devel/vignettes_compile.R @@ -0,0 +1,14 @@ +### vignettes are too large to be included on CRAN. I think because they are in .Rbuildignore devtools::document does not build them. I don't quite understand that because Roxygen is configured to build them in DESCRIPTION. Anyway, I had to run this to update them. + +dir.vignettes <- "~/wdirs/NMdata/vignettes" +setwd(dir.vignettes) + +library(NMdata) +library(rmarkdown) + +names.vignettes <- cc(DataPrepare,"NMdata-cheat","NMdata-FAQ",NMscanData) + +for(fn in names.vignettes){ + render(fnExtension(fn,"Rmd")) +} + diff --git a/tests/testthat/testData/nonmem/estim_debug.ext b/tests/testthat/testData/nonmem/estim_debug.ext new file mode 100644 index 00000000..21396313 --- /dev/null +++ b/tests/testthat/testData/nonmem/estim_debug.ext @@ -0,0 +1,11 @@ +TABLE NO. 1: Laplacian Conditional Estimation: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 SIGMA(1,1) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OBJ + 0 7.09000E+00 2.98000E-01 1.15000E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 115.85529154812808 + 14 7.16625E+00 2.32987E-01 1.65673E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 112.40346696014036 + -1000000000 7.16625E+00 2.32987E-01 1.65673E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 112.40346696014036 + -1000000001 1.74290E-01 6.07397E-02 3.07520E-03 0.00000E+00 1.00000E+10 1.00000E+10 1.00000E+10 0.0000000000000000 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000005 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+10 1.00000E+10 1.00000E+10 1.00000E+10 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000008 3.95568E-04 -1.46051E-03 -7.63924E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/estim_debug.phi b/tests/testthat/testData/nonmem/estim_debug.phi new file mode 100644 index 00000000..16b092b6 --- /dev/null +++ b/tests/testthat/testData/nonmem/estim_debug.phi @@ -0,0 +1,52 @@ +TABLE NO. 1: Laplacian Conditional Estimation: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETC(1,1) ETC(2,1) ETC(2,2) OBJ + 1 108 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 2 135 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.2531621187106279E-002 + 3 142 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.27076418174345984 + 4 152 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 11.822176871268185 + 5 218 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.25201562874869216 + 6 250 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 7 252 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 11.714089400058899 + 8 312 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.1701748666771161E-002 + 9 317 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.44021473341688105 + 10 320 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 12.907242175055048 + 11 322 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.6087323125805841E-002 + 12 415 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 9.0119880051369561E-002 + 13 423 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.19459398455430754 + 14 424 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.12384864558316987 + 15 455 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.32616775444220891 + 16 527 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.9436650594378826E-002 + 17 560 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 13.430508963303362 + 18 601 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.0311993148786261E-002 + 19 607 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.27098315197768746 + 20 611 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.8208425412333403E-002 + 21 618 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.6067861709790922E-002 + 22 627 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.7237020636748767E-002 + 23 629 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.20208791231503731 + 24 635 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.0194823619254496 + 25 637 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.1488504483273289E-002 + 26 640 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.9917205538531619E-002 + 27 644 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.31793889002848869 + 28 654 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.9317300486222423E-002 + 29 659 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 13.256916575352234 + 30 705 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.4070969902221303E-002 + 31 719 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 17.760807830064415 + 32 741 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 5.8036638333032213 + 33 742 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.35627126169988926 + 34 745 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 16.649935742416798 + 35 753 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.79925121280886302 + 36 808 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.5154456806954172E-002 + 37 810 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.19797705577473718 + 38 817 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 9.7916024512736868E-003 + 39 822 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.32309982436678902 + 40 832 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.18267982436695254 + 41 848 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.19417567425780435 + 42 863 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.14535326923870404 + 43 906 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.9800097933060624E-002 + 44 907 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.3662960741694933E-002 + 45 910 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.13881087402694034 + 46 925 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.3536289015580506E-002 + 47 1035 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.17202681219323290 + 48 1042 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.1463724429578392 + 49 1047 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 9.9537487275212291E-002 + 50 1051 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.6030673723951632E-002 diff --git a/tests/testthat/testData/nonmem/min036.ext b/tests/testthat/testData/nonmem/min036.ext new file mode 100644 index 00000000..66d91415 --- /dev/null +++ b/tests/testthat/testData/nonmem/min036.ext @@ -0,0 +1,17 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 THETA6 THETA7 THETA8 THETA9 THETA10 THETA11 SIGMA(1,1) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OMEGA(6,1) OMEGA(6,2) OMEGA(6,3) OMEGA(6,4) OMEGA(6,5) OMEGA(6,6) OMEGA(7,1) OMEGA(7,2) OMEGA(7,3) OMEGA(7,4) OMEGA(7,5) OMEGA(7,6) OMEGA(7,7) OMEGA(8,1) OMEGA(8,2) OMEGA(8,3) OMEGA(8,4) OMEGA(8,5) OMEGA(8,6) OMEGA(8,7) OMEGA(8,8) OMEGA(9,1) OMEGA(9,2) OMEGA(9,3) OMEGA(9,4) OMEGA(9,5) OMEGA(9,6) OMEGA(9,7) OMEGA(9,8) OMEGA(9,9) OMEGA(10,1) OMEGA(10,2) OMEGA(10,3) OMEGA(10,4) OMEGA(10,5) OMEGA(10,6) OMEGA(10,7) OMEGA(10,8) OMEGA(10,9) OMEGA(10,10) OBJ + 0 3.28000E+00 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32128E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10354E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69891E-01 -5575.9479600769346 + 48 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48262E+00 -2.60167E+00 -1.29062E+01 -2.72919E+00 2.16705E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32247E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10356E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69895E-01 -5575.9496469752576 + -1000000000 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48262E+00 -2.60167E+00 -1.29062E+01 -2.72919E+00 2.16705E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32247E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10356E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69895E-01 -5575.9496469752576 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.47209E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.07906E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.32198E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 5.19514E-01 0.0000000000000000 + -1000000006 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 3.80000E+01 4.90000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/min036.phi b/tests/testthat/testData/nonmem/min036.phi new file mode 100644 index 00000000..f9069124 --- /dev/null +++ b/tests/testthat/testData/nonmem/min036.phi @@ -0,0 +1,7 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETA(6) ETA(7) ETA(8) ETA(9) ETA(10) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) ETC(6,1) ETC(6,2) ETC(6,3) ETC(6,4) ETC(6,5) ETC(6,6) ETC(7,1) ETC(7,2) ETC(7,3) ETC(7,4) ETC(7,5) ETC(7,6) ETC(7,7) ETC(8,1) ETC(8,2) ETC(8,3) ETC(8,4) ETC(8,5) ETC(8,6) ETC(8,7) ETC(8,8) ETC(9,1) ETC(9,2) ETC(9,3) ETC(9,4) ETC(9,5) ETC(9,6) ETC(9,7) ETC(9,8) ETC(9,9) ETC(10,1) ETC(10,2) ETC(10,3) ETC(10,4) ETC(10,5) ETC(10,6) ETC(10,7) ETC(10,8) ETC(10,9) ETC(10,10) OBJ + 1 1 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.33893E-02 5.44944E-01 8.58028E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.01886E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -2.39459E-04 1.52642E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.62106E-04 1.32355E-03 1.21007E-03 -1200.9607716452565 + 2 2 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.03048E-03 1.67330E-01 2.65647E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.04340E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.47447E-04 6.14678E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -8.80722E-05 4.80244E-04 4.16525E-04 -1207.4828949751532 + 3 3 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -8.14143E-03 -6.83689E-02 -1.17513E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.42372E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.25321E-04 4.13339E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -6.77434E-05 2.94410E-04 2.45347E-04 -1137.7065465369337 + 4 4 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.48319E-02 -2.36182E-01 -3.84393E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.45734E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.19111E-04 3.32675E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.88021E-05 2.16812E-04 1.74686E-04 -1059.6491599802594 + 5 5 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.83361E-02 -4.02785E-01 -6.14904E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.10648E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.22437E-04 2.90146E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.42016E-05 1.69488E-04 1.31357E-04 -970.15027383765448 diff --git a/tests/testthat/testData/nonmem/min036mod.ext b/tests/testthat/testData/nonmem/min036mod.ext new file mode 100644 index 00000000..66d91415 --- /dev/null +++ b/tests/testthat/testData/nonmem/min036mod.ext @@ -0,0 +1,17 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 THETA6 THETA7 THETA8 THETA9 THETA10 THETA11 SIGMA(1,1) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OMEGA(6,1) OMEGA(6,2) OMEGA(6,3) OMEGA(6,4) OMEGA(6,5) OMEGA(6,6) OMEGA(7,1) OMEGA(7,2) OMEGA(7,3) OMEGA(7,4) OMEGA(7,5) OMEGA(7,6) OMEGA(7,7) OMEGA(8,1) OMEGA(8,2) OMEGA(8,3) OMEGA(8,4) OMEGA(8,5) OMEGA(8,6) OMEGA(8,7) OMEGA(8,8) OMEGA(9,1) OMEGA(9,2) OMEGA(9,3) OMEGA(9,4) OMEGA(9,5) OMEGA(9,6) OMEGA(9,7) OMEGA(9,8) OMEGA(9,9) OMEGA(10,1) OMEGA(10,2) OMEGA(10,3) OMEGA(10,4) OMEGA(10,5) OMEGA(10,6) OMEGA(10,7) OMEGA(10,8) OMEGA(10,9) OMEGA(10,10) OBJ + 0 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.51000E+00 -2.91000E+00 -1.33000E+01 -2.42000E+00 1.42000E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.00000E-01 -5016.2657188717430 + 5 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -2.61589E+00 -1.10749E+00 -1.30308E+01 -2.83279E+00 2.69835E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.99466E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.00072E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.00646E-01 -5350.6690802463745 + 10 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.45369E+00 -2.76501E+00 -1.43986E+01 -2.77017E+00 2.36503E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.05859E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.23837E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.48042E+00 -5529.7980095986568 + 15 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.47500E+00 -2.61456E+00 -1.30296E+01 -2.73255E+00 2.17899E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.67301E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.42898E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.64658E-01 -5554.9989171849002 + 20 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.45973E+00 -2.59831E+00 -1.28448E+01 -2.72336E+00 2.10443E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.28352E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.16771E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 6.21300E-01 -5566.9255562062772 + 25 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48227E+00 -2.58634E+00 -1.30526E+01 -2.72804E+00 2.16749E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.70013E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00715E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.81829E-01 -5575.5162922652235 + 30 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48229E+00 -2.59320E+00 -1.30481E+01 -2.72801E+00 2.16808E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.58751E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.08819E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.90173E-01 -5575.5738225751329 + 35 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48267E+00 -2.62039E+00 -1.29367E+01 -2.72811E+00 2.16672E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.31149E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10149E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.80672E-01 -5575.9104081848600 + 40 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48268E+00 -2.61419E+00 -1.29053E+01 -2.72932E+00 2.16707E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.31091E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10545E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69896E-01 -5575.9409332262849 + 45 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48265E+00 -2.60671E+00 -1.29050E+01 -2.72921E+00 2.16705E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32128E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10354E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69891E-01 -5575.9479600769346 + 48 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48262E+00 -2.60167E+00 -1.29062E+01 -2.72919E+00 2.16705E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32247E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10356E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69895E-01 -5575.9496469752576 + -1000000000 3.28000E+00 1.16000E+00 4.19000E+00 2.43000E-01 1.00000E+00 1.00000E+00 1.00000E+00 -4.48262E+00 -2.60167E+00 -1.29062E+01 -2.72919E+00 2.16705E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4.32247E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.10356E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.69895E-01 -5575.9496469752576 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.47209E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 3.80000E+01 4.90000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/min036mod.phi b/tests/testthat/testData/nonmem/min036mod.phi new file mode 100644 index 00000000..f9069124 --- /dev/null +++ b/tests/testthat/testData/nonmem/min036mod.phi @@ -0,0 +1,7 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETA(6) ETA(7) ETA(8) ETA(9) ETA(10) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) ETC(6,1) ETC(6,2) ETC(6,3) ETC(6,4) ETC(6,5) ETC(6,6) ETC(7,1) ETC(7,2) ETC(7,3) ETC(7,4) ETC(7,5) ETC(7,6) ETC(7,7) ETC(8,1) ETC(8,2) ETC(8,3) ETC(8,4) ETC(8,5) ETC(8,6) ETC(8,7) ETC(8,8) ETC(9,1) ETC(9,2) ETC(9,3) ETC(9,4) ETC(9,5) ETC(9,6) ETC(9,7) ETC(9,8) ETC(9,9) ETC(10,1) ETC(10,2) ETC(10,3) ETC(10,4) ETC(10,5) ETC(10,6) ETC(10,7) ETC(10,8) ETC(10,9) ETC(10,10) OBJ + 1 1 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.33893E-02 5.44944E-01 8.58028E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.01886E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -2.39459E-04 1.52642E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.62106E-04 1.32355E-03 1.21007E-03 -1200.9607716452565 + 2 2 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.03048E-03 1.67330E-01 2.65647E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.04340E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.47447E-04 6.14678E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -8.80722E-05 4.80244E-04 4.16525E-04 -1207.4828949751532 + 3 3 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.10648E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1.22437E-04 2.90146E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.42016E-05 1.69488E-04 1.31357E-04 -970.15027383765448 diff --git a/tests/testthat/testData/nonmem/xgxr001.ext b/tests/testthat/testData/nonmem/xgxr001.ext new file mode 100644 index 00000000..e898954a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr001.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1627.9920332767449 + 20 1.76648E-01 4.20000E-02 7.15024E-01 1.71101E-01 5.49437E+02 1.10110E-01 0.00000E+00 1.31583E-03 1.81514E-01 0.00000E+00 8.14091E-02 0.00000E+00 0.00000E+00 3.64331E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1948.5917421346710 + 30 1.81307E-01 4.20000E-02 7.24727E-01 1.78566E-01 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr001.phi b/tests/testthat/testData/nonmem/xgxr001.phi new file mode 100644 index 00000000..1f432951 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr001.phi @@ -0,0 +1,152 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 31 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 2 32 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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4.88378E-04 0.00000E+00 0.00000E+00 8.99341E-03 -3.07882E-04 1.06011E-02 -2.20100E-05 1.39046E-04 1.69482E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.3616933819720991 + 150 180 1.99814E-01 -6.33293E-01 6.79402E-04 0.00000E+00 0.00000E+00 1.49106E-02 -2.95079E-03 1.29876E-02 -1.52091E-05 1.43544E-04 1.69529E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220066070713692 diff --git a/tests/testthat/testData/nonmem/xgxr002.ext b/tests/testthat/testData/nonmem/xgxr002.ext new file mode 100644 index 00000000..9bbbcafb --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr002.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 4186.8795638461506 + 10 1.80957E-01 2.18443E-01 1.07648E+01 2.24327E+00 4.23163E+01 1.06606E-01 0.00000E+00 2.70720E-03 7.90373E-02 0.00000E+00 1.37721E-01 0.00000E+00 0.00000E+00 4.19010E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1540.6734749692248 + 20 1.72751E-01 4.36827E-02 1.12441E+00 2.70442E-01 1.21040E+02 1.14664E-01 0.00000E+00 1.32606E-03 1.78886E-01 0.00000E+00 1.11388E-01 0.00000E+00 0.00000E+00 1.17836E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1936.9662180803780 + 30 1.73505E-01 4.20000E-02 1.07476E+00 2.56046E-01 1.20162E+03 1.11807E-01 0.00000E+00 1.32789E-03 1.84466E-01 0.00000E+00 1.29998E-01 0.00000E+00 0.00000E+00 1.17168E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1938.4173250315812 + 40 1.73670E-01 4.20000E-02 1.07758E+00 2.56335E-01 3.67794E+05 1.11353E-01 0.00000E+00 1.33185E-03 1.84405E-01 0.00000E+00 1.29372E-01 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1938.4612701246429 + 49 1.73873E-01 4.20000E-02 1.08197E+00 2.57960E-01 3.31607E+10 1.11222E-01 0.00000E+00 1.33555E-03 1.84820E-01 0.00000E+00 1.29594E-01 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1938.4673985980692 + 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -3.2460114500491239 + 149 179 -1.65867E-01 6.67095E-01 1.53483E-05 0.00000E+00 0.00000E+00 9.29962E-03 -3.12972E-04 1.09038E-02 -1.26757E-06 8.23931E-06 9.99899E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.3101975544924969 + 150 180 2.30383E-01 -5.18220E-01 2.84197E-05 0.00000E+00 0.00000E+00 1.51275E-02 -2.92737E-03 1.33169E-02 -8.52676E-07 8.51011E-06 9.99916E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -14.459305949907046 diff --git a/tests/testthat/testData/nonmem/xgxr004.ext b/tests/testthat/testData/nonmem/xgxr004.ext new file mode 100644 index 00000000..d2c0159d --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr004.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3213.2115507137487 + 10 1.57184E-01 3.51750E-01 1.55239E+01 7.96611E-01 6.64882E+01 1.32859E-01 0.00000E+00 3.68515E-03 1.29123E-01 0.00000E+00 7.22425E-02 0.00000E+00 0.00000E+00 1.02983E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1093.2435106321011 + 20 1.91890E-01 4.53648E-02 8.54457E-01 2.28645E-01 1.46432E+02 9.19046E-02 0.00000E+00 3.23295E-03 2.59550E-01 0.00000E+00 1.03961E-01 0.00000E+00 0.00000E+00 3.22964E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1353.2720773689352 + 30 1.92640E-01 5.24423E-02 9.79527E-01 2.60592E-01 6.76061E+03 9.29482E-02 0.00000E+00 3.02716E-03 2.64135E-01 0.00000E+00 1.37294E-01 0.00000E+00 0.00000E+00 4.82200E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0427517146463 + 40 1.92444E-01 5.05677E-02 9.43040E-01 2.50219E-01 2.75453E+04 9.30421E-02 0.00000E+00 3.02349E-03 2.65135E-01 0.00000E+00 1.38757E-01 0.00000E+00 0.00000E+00 1.05905E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0614256986289 + 50 1.92646E-01 5.03042E-02 9.39112E-01 2.49467E-01 1.67541E+06 9.29091E-02 0.00000E+00 3.03195E-03 2.65307E-01 0.00000E+00 1.38853E-01 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0654690396441 + -1000000000 1.92646E-01 5.03042E-02 9.39112E-01 2.49467E-01 1.67541E+06 9.29091E-02 0.00000E+00 3.03195E-03 2.65307E-01 0.00000E+00 1.38853E-01 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0654690396441 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.04810E-01 0.00000E+00 5.50631E-02 5.15080E-01 0.00000E+00 3.72629E-01 0.00000E+00 0.00000E+00 3.16228E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr004.phi b/tests/testthat/testData/nonmem/xgxr004.phi new file mode 100644 index 00000000..01803376 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr004.phi @@ -0,0 +1,92 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 91 5.44156E-01 3.82338E-01 -3.48870E-05 0.00000E+00 0.00000E+00 6.69476E-02 -3.58423E-02 3.79866E-02 -6.83837E-07 7.77750E-06 9.99922E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.272330755552055 + 2 92 -2.73778E-01 2.21473E-03 -7.53223E-06 0.00000E+00 0.00000E+00 1.06536E-01 -6.27839E-02 6.70213E-02 2.88473E-06 5.27077E-06 9.99952E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -27.573005174983184 + 3 93 9.28593E-02 -2.26508E-01 2.73639E-05 0.00000E+00 0.00000E+00 1.11735E-01 -6.82730E-02 7.10683E-02 2.85179E-06 4.96194E-06 9.99952E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.530459304970336 + 4 94 -1.53334E-01 -1.55362E-01 6.70791E-06 0.00000E+00 0.00000E+00 1.22873E-01 -7.24720E-02 8.05405E-02 3.55475E-06 4.10286E-06 9.99964E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -16.503241554684891 + 5 95 -1.09907E-01 -4.74492E-03 -7.00853E-06 0.00000E+00 0.00000E+00 9.25783E-02 -4.97668E-02 5.49960E-02 2.24660E-06 6.12606E-06 9.99947E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -30.177302021895908 + 6 96 -9.40299E-02 -8.69837E-02 -2.81498E-06 0.00000E+00 0.00000E+00 1.15450E-01 -7.12412E-02 7.53775E-02 3.29417E-06 4.62179E-06 9.99956E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -19.782269078263592 + 7 97 -7.75573E-02 -1.76657E-01 1.40478E-05 0.00000E+00 0.00000E+00 1.24723E-01 -7.02105E-02 7.53695E-02 3.68331E-06 4.57582E-06 9.99962E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -17.785498860212609 + 8 98 -4.27902E-01 3.77015E-01 -3.30180E-05 0.00000E+00 0.00000E+00 7.32472E-02 -4.18817E-02 4.83281E-02 1.23411E-06 6.57574E-06 9.99940E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -37.718437236930903 + 9 99 6.97554E-02 1.23001E-01 -1.42870E-05 0.00000E+00 0.00000E+00 8.29190E-02 -4.53204E-02 4.80489E-02 1.20417E-06 6.81148E-06 9.99935E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -24.757035834318703 + 10 100 -2.40563E-01 -2.10046E-01 1.42612E-05 0.00000E+00 0.00000E+00 1.32752E-01 -7.20733E-02 8.15237E-02 3.93853E-06 4.09183E-06 9.99964E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -18.394965120906125 + 11 101 2.28045E-01 -6.94880E-02 9.28922E-06 0.00000E+00 0.00000E+00 1.07974E-01 -6.20238E-02 6.26280E-02 2.23753E-06 5.77320E-06 9.99944E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.517773804510739 + 12 102 4.83244E-01 8.50663E-02 -3.32451E-06 0.00000E+00 0.00000E+00 8.12339E-02 -4.29934E-02 4.46583E-02 2.33962E-07 7.20546E-06 9.99928E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -17.774566967655304 + 13 103 -4.07673E-01 -9.65306E-03 1.02111E-06 0.00000E+00 0.00000E+00 1.05764E-01 -5.63416E-02 6.63623E-02 2.70292E-06 5.15184E-06 9.99957E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -33.520240495461749 + 14 104 -1.99178E-01 -7.10881E-02 3.54419E-06 0.00000E+00 0.00000E+00 1.11157E-01 -6.07281E-02 6.74597E-02 2.87976E-06 5.14960E-06 9.99956E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -23.635783853733678 + 15 105 5.18598E-01 1.88704E-01 -1.10348E-05 0.00000E+00 0.00000E+00 7.42827E-02 -3.78275E-02 4.09977E-02 -2.97456E-07 7.42796E-06 9.99926E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.845055563994524 + 16 106 -2.41123E-01 -1.55788E-01 1.24320E-05 0.00000E+00 0.00000E+00 1.30294E-01 -7.60834E-02 9.09455E-02 4.24139E-06 3.21059E-06 9.99972E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.105658597623743 + 17 107 8.74579E-02 -1.43925E-01 1.39203E-05 0.00000E+00 0.00000E+00 1.14856E-01 -6.80917E-02 7.09735E-02 2.88651E-06 5.00993E-06 9.99952E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.587244361075559 + 18 108 -1.87738E-01 -1.03971E-01 1.19185E-05 0.00000E+00 0.00000E+00 1.11735E-01 -6.19693E-02 6.81554E-02 3.19449E-06 5.07426E-06 9.99959E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -21.428179007169671 + 19 109 -3.69280E-01 6.96666E-02 -6.31409E-06 0.00000E+00 0.00000E+00 1.01509E-01 -5.57544E-02 6.26546E-02 2.76216E-06 5.47738E-06 9.99956E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -26.600319410764275 + 20 110 1.33940E-01 -1.04670E-01 1.75170E-05 0.00000E+00 0.00000E+00 1.04666E-01 -6.47614E-02 6.68940E-02 2.25740E-06 5.37442E-06 9.99946E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -21.359303335066734 + 21 111 5.64528E-01 9.52676E-03 3.93486E-06 0.00000E+00 0.00000E+00 8.09232E-02 -4.54148E-02 4.72392E-02 1.92266E-08 6.98300E-06 9.99928E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -15.680646762761038 + 22 112 2.60464E-01 9.77657E-02 -8.28366E-06 0.00000E+00 0.00000E+00 7.47959E-02 -3.86572E-02 4.26220E-02 5.20237E-07 7.17354E-06 9.99930E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -25.177883038909627 + 23 113 1.29217E-01 2.14239E-01 -2.04616E-05 0.00000E+00 0.00000E+00 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4.88117E-01 3.57461E-03 -2.07823E-06 0.00000E+00 0.00000E+00 1.12304E-02 -1.24239E-03 1.25354E-02 -1.55893E-06 8.09917E-06 9.99910E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.1101408909123442 + 79 169 -4.64597E-01 2.68684E-01 -4.02488E-05 0.00000E+00 0.00000E+00 1.38305E-02 -3.70938E-03 1.09731E-02 -1.47562E-06 8.50827E-06 9.99898E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -6.8343042028291023 + 80 170 4.47007E-01 -5.71466E-01 5.73020E-05 0.00000E+00 0.00000E+00 1.78099E-02 -5.05162E-03 1.42114E-02 -1.48596E-06 8.34841E-06 9.99902E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -8.1716849470639303 + 81 171 -7.29021E-01 3.41101E-01 -2.95217E-05 0.00000E+00 0.00000E+00 1.82350E-02 -6.51218E-03 1.17784E-02 -1.16024E-06 8.85973E-06 9.99901E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.730877536645075 + 82 172 7.34478E-01 -6.20039E-01 5.51773E-05 0.00000E+00 0.00000E+00 1.76757E-02 -3.69087E-03 1.45809E-02 -1.86655E-06 8.25671E-06 9.99895E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -6.8127338297755715 + 83 173 7.35755E-01 -1.12294E-01 2.54104E-05 0.00000E+00 0.00000E+00 1.17975E-02 -1.44786E-03 1.34577E-02 -1.85087E-06 7.87462E-06 9.99901E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -4.5614598530243846 + 84 174 -2.25852E-01 3.13433E-01 -3.33334E-05 0.00000E+00 0.00000E+00 1.16499E-02 -1.99184E-03 1.04857E-02 -1.14323E-06 8.67498E-06 9.99896E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -0.49241321379837200 + 85 175 6.74596E-01 -1.62341E-01 3.74221E-05 0.00000E+00 0.00000E+00 1.27864E-02 -1.12799E-03 1.30967E-02 -1.42140E-06 8.43585E-06 9.99911E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -0.85056108781965878 + 86 176 -4.84206E-01 3.83033E-01 -2.30348E-05 0.00000E+00 0.00000E+00 1.47141E-02 -2.62436E-03 1.08906E-02 -7.85384E-07 8.90379E-06 9.99920E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -4.6995880996997483 + 87 177 -3.08721E-01 6.09652E-02 5.19221E-06 0.00000E+00 0.00000E+00 1.38760E-02 -3.67104E-03 1.14705E-02 -1.38878E-06 8.44633E-06 9.99898E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.639800997981803 + 88 178 -2.52108E-02 1.85256E-01 -6.53583E-06 0.00000E+00 0.00000E+00 1.14644E-02 -1.86392E-03 1.11367E-02 -1.40412E-06 8.36673E-06 9.99898E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.2496808858049429 + 89 179 -1.69891E-01 5.02800E-01 3.89931E-05 0.00000E+00 0.00000E+00 9.72867E-03 -1.12738E-03 1.04790E-02 -1.44065E-06 8.29770E-06 9.99896E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 8.6231234262462362 + 90 180 2.58971E-01 -6.20444E-01 2.97953E-05 0.00000E+00 0.00000E+00 1.88451E-02 -5.64981E-03 1.41498E-02 -1.08364E-06 8.55851E-06 9.99914E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -14.953652526481838 diff --git a/tests/testthat/testData/nonmem/xgxr005.ext b/tests/testthat/testData/nonmem/xgxr005.ext new file mode 100644 index 00000000..d8c02d0c --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr005.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1742.1131644297802 + 10 2.22010E-01 1.94826E-01 6.23734E+00 1.85943E+00 7.49664E+01 1.45624E-01 0.00000E+00 3.87359E-03 5.49483E-01 0.00000E+00 5.52640E-01 0.00000E+00 0.00000E+00 1.19031E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1053.1820416359308 + 20 1.92153E-01 4.20822E-02 7.32375E-01 2.07710E-01 3.32027E+01 6.76787E-02 0.00000E+00 1.45427E-03 2.51106E-01 0.00000E+00 6.98629E-02 0.00000E+00 0.00000E+00 2.03211E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1261.8660170920555 + 30 1.75331E-01 4.20000E-02 7.18579E-01 1.97060E-01 2.81961E+03 7.38739E-02 0.00000E+00 1.40850E-03 2.34242E-01 0.00000E+00 6.75915E-02 0.00000E+00 0.00000E+00 1.05408E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1265.5317956490592 + 40 1.76279E-01 4.20000E-02 7.20977E-01 1.98578E-01 1.62421E+04 7.24955E-02 0.00000E+00 1.43939E-03 2.36817E-01 0.00000E+00 6.30191E-02 0.00000E+00 0.00000E+00 1.70044E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1265.6060832528506 + 50 1.76460E-01 4.20000E-02 7.21445E-01 1.98874E-01 5.75495E+05 7.23730E-02 0.00000E+00 1.44146E-03 2.37760E-01 0.00000E+00 6.37316E-02 0.00000E+00 0.00000E+00 1.67922E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1265.6111525819060 + 54 1.76580E-01 4.20000E-02 7.21511E-01 1.98978E-01 1.65069E+06 7.22859E-02 0.00000E+00 1.44327E-03 2.38129E-01 0.00000E+00 6.39563E-02 0.00000E+00 0.00000E+00 1.67710E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1265.6112874232304 + -1000000000 1.76580E-01 4.20000E-02 7.21511E-01 1.98978E-01 1.65069E+06 7.22859E-02 0.00000E+00 1.44327E-03 2.38129E-01 0.00000E+00 6.39563E-02 0.00000E+00 0.00000E+00 1.67710E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1265.6112874232304 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.68860E-01 0.00000E+00 3.79904E-02 4.87984E-01 0.00000E+00 2.52896E-01 0.00000E+00 0.00000E+00 1.29503E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr005.phi b/tests/testthat/testData/nonmem/xgxr005.phi new file mode 100644 index 00000000..2a26454a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr005.phi @@ -0,0 +1,62 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 91 6.82935E-01 2.23444E-01 -7.16124E-02 0.00000E+00 0.00000E+00 4.56937E-02 -2.17710E-02 2.93856E-02 -3.87094E-04 9.34637E-03 1.35741E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.279609308497186 + 2 92 -2.74750E-01 -1.61350E-03 -1.70511E-02 0.00000E+00 0.00000E+00 6.96000E-02 -3.48213E-02 4.02917E-02 5.64829E-03 6.38409E-03 1.46120E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -29.842764371009618 + 3 93 1.20076E-01 -1.67014E-01 7.33463E-02 0.00000E+00 0.00000E+00 7.35125E-02 -3.83999E-02 4.25806E-02 5.95312E-03 5.81463E-03 1.47146E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.481707023813399 + 4 94 -1.81608E-01 -1.03662E-01 1.76035E-02 0.00000E+00 0.00000E+00 8.20196E-02 -4.12838E-02 4.65581E-02 7.39638E-03 4.57916E-03 1.52315E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -16.691024155497406 + 5 95 -8.95978E-02 -1.99514E-02 -1.12525E-02 0.00000E+00 0.00000E+00 5.79890E-02 -2.55742E-02 3.40081E-02 3.92456E-03 7.87050E-03 1.43009E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -31.556279373730710 + 6 96 -1.10936E-01 -6.08260E-02 -5.86869E-03 0.00000E+00 0.00000E+00 7.63223E-02 -4.04304E-02 4.48137E-02 6.70676E-03 5.19137E-03 1.49093E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -19.737804402223905 + 7 97 -9.09230E-02 -1.27436E-01 3.89221E-02 0.00000E+00 0.00000E+00 8.53123E-02 -4.01985E-02 4.45975E-02 7.81320E-03 5.18984E-03 1.51480E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -18.714736463508860 + 8 98 -4.14295E-01 3.06706E-01 -8.56486E-02 0.00000E+00 0.00000E+00 4.37143E-02 -2.09592E-02 3.06760E-02 1.97387E-03 8.56197E-03 1.40063E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -39.156569931708049 + 9 99 1.23206E-01 6.38659E-02 -2.71823E-02 0.00000E+00 0.00000E+00 5.29027E-02 -2.44759E-02 3.21748E-02 2.40017E-03 8.45243E-03 1.39163E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -26.459278401820146 + 10 100 -2.90409E-01 -1.39929E-01 3.66568E-02 0.00000E+00 0.00000E+00 8.98888E-02 -4.15544E-02 4.69725E-02 8.29684E-03 4.50233E-03 1.52871E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -19.544986772831855 + 11 101 2.71515E-01 -6.72816E-02 2.90142E-02 0.00000E+00 0.00000E+00 7.26718E-02 -3.55448E-02 3.96896E-02 4.83782E-03 6.74209E-03 1.43879E-02 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6.66773E-02 0.00000E+00 0.00000E+00 2.22399E-02 -5.52472E-03 2.16396E-02 -1.00745E-03 1.06118E-02 1.35734E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -16.999345227432357 + 60 150 3.09740E-01 -3.45274E-01 6.48465E-02 0.00000E+00 0.00000E+00 3.03801E-02 -1.35083E-02 2.38659E-02 -6.12807E-04 9.81091E-03 1.32764E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.708740790192669 diff --git a/tests/testthat/testData/nonmem/xgxr007.ext b/tests/testthat/testData/nonmem/xgxr007.ext new file mode 100644 index 00000000..863fe7f6 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr007.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3514.9502826387725 + 10 1.52827E-01 2.59765E-01 5.67556E+00 1.53592E+00 8.32607E+01 2.58766E-01 0.00000E+00 2.10187E-03 5.19912E-02 0.00000E+00 1.44370E-01 0.00000E+00 0.00000E+00 8.00436E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1641.5391716120362 + 20 1.76988E-01 4.27742E-02 7.30111E-01 1.79580E-01 9.77603E+01 1.06697E-01 0.00000E+00 1.35226E-03 2.01281E-01 0.00000E+00 9.61421E-02 0.00000E+00 0.00000E+00 2.04414E-02 0.00000E+00 0.00000E+00 0.00000E+00 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 5.6984234692016997 + 127 165 7.99492E-01 -7.14611E-01 5.56280E-05 0.00000E+00 0.00000E+00 1.39758E-02 -2.13582E-03 1.44647E-02 -1.57806E-06 7.85929E-06 9.99904E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 5.7312802367337596 + 128 166 -3.49878E-02 -7.37198E-02 8.07582E-06 0.00000E+00 0.00000E+00 1.10769E-02 -1.05019E-03 1.13091E-02 -1.10489E-06 8.37985E-06 9.99894E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -6.3557744929115083 + 129 167 4.47533E-01 -2.19714E-01 2.17491E-05 0.00000E+00 0.00000E+00 1.12548E-02 -2.66377E-04 1.23472E-02 -8.10052E-07 8.69063E-06 9.99915E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -6.2016449322820977 + 130 168 4.57006E-01 -4.63683E-02 5.30402E-06 0.00000E+00 0.00000E+00 9.64551E-03 -1.78036E-05 1.25275E-02 -1.33555E-06 7.98419E-06 9.99908E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -0.65322880400440031 + 131 169 -4.40993E-01 2.05113E-01 -3.75753E-05 0.00000E+00 0.00000E+00 1.29811E-02 -2.66529E-03 1.07755E-02 -1.33836E-06 8.39024E-06 9.99895E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.0414759986255877 + 132 170 4.96000E-01 -6.51059E-01 6.34382E-05 0.00000E+00 0.00000E+00 1.47094E-02 -2.67838E-03 1.35937E-02 -1.28449E-06 8.18552E-06 9.99900E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.0932615014801375 + 133 171 -6.80827E-01 2.61346E-01 -2.86105E-05 0.00000E+00 0.00000E+00 1.78482E-02 -5.64160E-03 1.16508E-02 -1.00508E-06 8.72514E-06 9.99898E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.559167483019284 + 134 172 6.77424E-01 -6.39364E-01 6.30313E-05 0.00000E+00 0.00000E+00 1.38122E-02 -1.42903E-03 1.39214E-02 -1.51602E-06 8.05295E-06 9.99894E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -4.7333463255539572 + 135 173 5.86644E-01 -8.86391E-02 3.64638E-05 0.00000E+00 0.00000E+00 9.54078E-03 3.12931E-06 1.30065E-02 -1.50959E-06 7.76876E-06 9.99900E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.5952622549635886 + 136 174 -2.89033E-01 3.14345E-01 -3.46827E-05 0.00000E+00 0.00000E+00 1.07219E-02 -1.08787E-03 1.02746E-02 -1.01793E-06 8.59133E-06 9.99894E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.27853200324256577 + 137 175 5.47614E-01 -1.28828E-01 3.72345E-05 0.00000E+00 0.00000E+00 1.01424E-02 2.87585E-04 1.27338E-02 -1.14257E-06 8.30726E-06 9.99909E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.90655953371175890 + 138 176 -4.76381E-01 3.41999E-01 -2.16393E-05 0.00000E+00 0.00000E+00 1.42809E-02 -2.01612E-03 1.09028E-02 -7.94385E-07 8.75757E-06 9.99911E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.0555349485513217 + 139 177 -2.95063E-01 -8.13145E-04 6.36492E-06 0.00000E+00 0.00000E+00 1.19586E-02 -2.02792E-03 1.09424E-02 -1.22574E-06 8.32780E-06 9.99895E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -14.005851175933529 + 140 178 -1.30550E-01 2.06077E-01 -6.68984E-06 0.00000E+00 0.00000E+00 9.72821E-03 -6.11803E-04 1.06892E-02 -1.19107E-06 8.29973E-06 9.99896E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -3.4943204424146859 + 141 179 -1.97703E-01 4.72869E-01 2.90496E-05 0.00000E+00 0.00000E+00 8.99204E-03 -3.00020E-04 1.04902E-02 -1.30164E-06 8.20679E-06 9.99894E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.4214040907463907 + 142 180 2.04932E-01 -6.33292E-01 3.96674E-05 0.00000E+00 0.00000E+00 1.49740E-02 -2.97841E-03 1.28988E-02 -9.03394E-07 8.46980E-06 9.99911E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.287138977944343 diff --git a/tests/testthat/testData/nonmem/xgxr009.ext b/tests/testthat/testData/nonmem/xgxr009.ext new file mode 100644 index 00000000..d99e71bf --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr009.ext @@ -0,0 +1,14 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 300.31142896690136 + 10 2.36302E-01 3.19542E-01 8.60031E+00 2.16391E+00 3.60520E+01 7.28793E-02 0.00000E+00 1.04530E-03 4.67265E-02 0.00000E+00 1.05774E-01 0.00000E+00 0.00000E+00 4.33481E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -539.58381204892555 + 20 1.66105E-01 1.10805E-01 1.41685E+00 3.70890E-01 4.92786E+01 4.06410E-02 0.00000E+00 9.74738E-05 7.23543E-02 0.00000E+00 1.74943E-02 0.00000E+00 0.00000E+00 7.94338E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -615.82403185407532 + 30 2.29895E-01 4.40847E-02 6.79332E-01 2.77672E-01 1.89608E+00 4.31536E-02 0.00000E+00 2.00000E-05 6.17801E-02 0.00000E+00 1.40598E-02 0.00000E+00 0.00000E+00 2.84439E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -622.91815958479242 + 40 2.94204E-01 4.42295E-02 7.67797E-01 4.23104E-01 2.49981E+00 4.36115E-02 0.00000E+00 2.00000E-05 3.49007E-02 0.00000E+00 5.57185E-02 0.00000E+00 0.00000E+00 1.76908E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -623.96586414772844 + 50 2.87606E-01 4.20000E-02 7.21679E-01 3.88734E-01 2.31420E+00 4.36538E-02 0.00000E+00 2.00000E-05 3.69138E-02 0.00000E+00 5.51869E-02 0.00000E+00 0.00000E+00 1.72074E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -624.01992096192282 + 60 2.85345E-01 4.20000E-02 7.19557E-01 3.83647E-01 2.30017E+00 4.36684E-02 0.00000E+00 2.00000E-05 3.72437E-02 0.00000E+00 5.50578E-02 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -624.02439310207592 + 61 2.85345E-01 4.20000E-02 7.19557E-01 3.83647E-01 2.30017E+00 4.36684E-02 0.00000E+00 2.00000E-05 3.72437E-02 0.00000E+00 5.50578E-02 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -624.02439310207592 + -1000000000 2.85345E-01 4.20000E-02 7.19557E-01 3.83647E-01 2.30017E+00 4.36684E-02 0.00000E+00 2.00000E-05 3.72437E-02 0.00000E+00 5.50578E-02 0.00000E+00 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -624.02439310207592 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.08970E-01 0.00000E+00 4.47214E-03 1.92986E-01 0.00000E+00 2.34644E-01 0.00000E+00 0.00000E+00 3.16228E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr009.phi b/tests/testthat/testData/nonmem/xgxr009.phi new file mode 100644 index 00000000..89b8ddb2 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr009.phi @@ -0,0 +1,32 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 61 7.05621E-02 1.78378E-01 -3.53324E-05 0.00000E+00 0.00000E+00 2.47591E-02 -1.75604E-02 2.20878E-02 1.24215E-06 4.32581E-06 9.99907E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.810154340839620 + 2 62 -2.78374E-02 -6.75703E-02 1.32720E-05 0.00000E+00 0.00000E+00 2.73257E-02 -1.65221E-02 2.16247E-02 1.88121E-06 4.90941E-06 9.99911E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.460217564648556 + 3 63 -1.20565E-01 -2.72845E-01 4.70418E-05 0.00000E+00 0.00000E+00 2.72271E-02 -1.68140E-02 2.22979E-02 1.98063E-06 4.74379E-06 9.99916E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.024500001142723 + 4 64 -6.73390E-02 -1.25624E-01 1.98716E-05 0.00000E+00 0.00000E+00 2.42889E-02 -1.25231E-02 1.84929E-02 2.82897E-07 5.87535E-06 9.99870E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.573579014028123 + 5 65 -7.47848E-02 -1.14420E-01 1.18990E-05 0.00000E+00 0.00000E+00 2.90568E-02 -1.51899E-02 2.36186E-02 2.08389E-06 4.82135E-06 9.99919E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.485103415697829 + 6 66 -1.56001E-01 -2.55893E-01 2.90937E-05 0.00000E+00 0.00000E+00 2.76625E-02 -1.64926E-02 2.60193E-02 2.07197E-06 3.80494E-06 9.99946E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -12.179842896591232 + 7 67 -1.69735E-01 -3.29410E-01 4.89001E-05 0.00000E+00 0.00000E+00 2.93174E-02 -1.50465E-02 2.37819E-02 2.18465E-06 4.94492E-06 9.99916E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.904260078294902 + 8 68 7.62000E-02 -7.38678E-03 1.39171E-05 0.00000E+00 0.00000E+00 2.02744E-02 -1.07145E-02 1.34111E-02 -6.96053E-07 7.17227E-06 9.99821E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -35.699207963405421 + 9 69 9.42069E-02 1.09865E-02 3.21899E-05 0.00000E+00 0.00000E+00 2.51974E-02 -1.72913E-02 2.13390E-02 1.27834E-06 4.54497E-06 9.99903E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -24.228146658478877 + 10 70 -7.10544E-02 -1.16969E-01 1.00884E-05 0.00000E+00 0.00000E+00 2.55535E-02 -1.73378E-02 2.13938E-02 1.44066E-06 4.74432E-06 9.99896E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -27.875967682603278 + 11 71 2.86089E-02 2.08817E-02 4.98552E-06 0.00000E+00 0.00000E+00 2.53326E-02 -1.71145E-02 2.09772E-02 1.33080E-06 4.76838E-06 9.99898E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -26.310958923223385 + 12 72 -7.43143E-02 1.92188E-01 -5.26142E-05 0.00000E+00 0.00000E+00 2.13044E-02 -1.33048E-02 1.62115E-02 -2.80313E-07 6.42153E-06 9.99832E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -31.424641823496504 + 13 73 -7.09144E-02 1.80300E-01 -5.71485E-05 0.00000E+00 0.00000E+00 2.36776E-02 -1.23735E-02 1.56289E-02 3.18972E-07 6.79684E-06 9.99844E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -25.826331402832533 + 14 74 1.50454E-01 2.10717E-01 -2.74614E-05 0.00000E+00 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0.00000E+00 -13.132436764222263 + 18 78 -1.71955E-01 -2.71595E-01 3.23088E-05 0.00000E+00 0.00000E+00 2.68754E-02 -1.28537E-02 1.82178E-02 1.14111E-06 6.32926E-06 9.99869E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.973883734606741 + 19 79 3.11288E-02 -1.26985E-01 4.93793E-05 0.00000E+00 0.00000E+00 2.57876E-02 -1.67291E-02 2.02434E-02 1.36209E-06 5.07837E-06 9.99891E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -24.063156147094976 + 20 80 -9.58925E-02 -1.32495E-01 8.09921E-06 0.00000E+00 0.00000E+00 2.71075E-02 -1.67755E-02 2.65808E-02 1.90406E-06 3.42109E-06 9.99954E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -12.390602651100307 + 21 81 3.28879E-01 4.09473E-01 -2.44133E-05 0.00000E+00 0.00000E+00 1.95962E-02 -7.39750E-03 1.17444E-02 -9.92588E-07 7.62813E-06 9.99829E-06 0.00000E+00 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-25.647355781555671 + 29 89 -4.18936E-03 -8.04835E-02 1.66725E-05 0.00000E+00 0.00000E+00 3.71614E-02 -1.58074E-03 2.46896E-02 3.27456E-07 6.29089E-06 9.99870E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.7190885890429577 + 30 90 -5.22730E-02 -1.02100E-01 1.05939E-05 0.00000E+00 0.00000E+00 2.73862E-02 -1.63489E-02 2.14101E-02 1.87428E-06 5.02939E-06 9.99908E-06 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -16.618388741111318 diff --git a/tests/testthat/testData/nonmem/xgxr010.ext b/tests/testthat/testData/nonmem/xgxr010.ext new file mode 100644 index 00000000..31a35036 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr010.ext @@ -0,0 +1,14 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 115.20797022291829 + 10 3.77645E-02 5.14143E-01 5.54471E-01 1.66382E+02 5.42884E+00 1.32627E-01 0.00000E+00 1.38656E-04 2.88061E-01 0.00000E+00 5.46532E-01 0.00000E+00 0.00000E+00 1.95645E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1643.7168601551862 + 20 1.90822E-01 2.52024E-01 9.09283E-02 5.46175E+01 4.64969E+00 7.36467E-02 0.00000E+00 4.88189E-05 8.95069E-02 0.00000E+00 3.68636E-03 0.00000E+00 0.00000E+00 1.33526E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1858.6726867477175 + 30 1.72068E-01 6.81066E-01 3.60000E-02 1.55116E+02 1.16889E+01 6.07068E-02 0.00000E+00 2.00000E-05 1.36235E-01 0.00000E+00 9.99889E-05 0.00000E+00 0.00000E+00 2.38041E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.0378790474299 + 40 1.72290E-01 8.47433E+00 3.60000E-02 1.94693E+03 1.45668E+02 6.01855E-02 0.00000E+00 2.00000E-05 1.36870E-01 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 7.43606E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.4025276658381 + 50 1.71996E-01 8.45531E+00 3.60000E-02 1.94303E+03 1.45151E+02 6.01711E-02 0.00000E+00 2.00000E-05 1.36696E-01 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 3.45151E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.4025808114195 + 60 1.72105E-01 8.43428E+00 3.60000E-02 1.93814E+03 1.44868E+02 6.01727E-02 0.00000E+00 2.00000E-05 1.36680E-01 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 2.94014E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.4027397417428 + 66 1.72286E-01 8.40518E+00 3.60000E-02 1.93089E+03 1.44471E+02 6.01785E-02 0.00000E+00 2.00000E-05 1.36749E-01 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.4028613032156 + -1000000000 1.72286E-01 8.40518E+00 3.60000E-02 1.93089E+03 1.44471E+02 6.01785E-02 0.00000E+00 2.00000E-05 1.36749E-01 0.00000E+00 1.00000E-05 0.00000E+00 0.00000E+00 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1881.4028613032156 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 2.45313E-01 0.00000E+00 4.47214E-03 3.69796E-01 0.00000E+00 3.16228E-03 0.00000E+00 0.00000E+00 9.35714E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr010.phi b/tests/testthat/testData/nonmem/xgxr010.phi new file mode 100644 index 00000000..4204fbea --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr010.phi @@ -0,0 +1,32 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 61 3.30421E-01 2.91224E-05 -1.06145E-07 0.00000E+00 0.00000E+00 1.65704E-02 -8.88084E-06 9.99026E-06 1.79186E-08 4.68197E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -51.758953848305246 + 2 62 -1.11539E-01 -1.39748E-05 3.87455E-08 0.00000E+00 0.00000E+00 1.53587E-02 -9.34753E-06 9.99196E-06 2.22965E-08 3.87751E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -68.768213263466279 + 3 63 -4.36366E-01 -3.52225E-05 7.28167E-08 0.00000E+00 0.00000E+00 1.38226E-02 -1.07248E-05 9.99432E-06 2.82151E-08 2.84317E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -71.603605391194918 + 4 64 -4.33650E-01 -3.34947E-05 6.20069E-08 0.00000E+00 0.00000E+00 1.33226E-02 -1.08582E-05 9.99450E-06 2.81366E-08 2.76155E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -70.455428077291401 + 5 65 -2.07763E-01 -4.73828E-05 1.18064E-07 0.00000E+00 0.00000E+00 1.47394E-02 -9.37670E-06 9.99246E-06 2.31746E-08 3.57867E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -67.686643713880642 + 6 66 -4.97884E-01 -3.81950E-05 5.99116E-08 0.00000E+00 0.00000E+00 1.40255E-02 -1.14665E-05 9.99478E-06 3.06618E-08 2.67287E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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0.00000E+00 0.00000E+00 0.00000E+00 -60.411622014146843 + 29 89 -6.17260E-01 -2.70411E-05 -1.03965E-08 0.00000E+00 0.00000E+00 1.29433E-02 -1.09280E-05 9.99538E-06 2.97559E-08 2.35943E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -72.290111304833260 + 30 90 -1.49373E-01 -2.17797E-05 5.46518E-08 0.00000E+00 0.00000E+00 1.52708E-02 -1.04538E-05 9.99259E-06 2.51165E-08 3.69016E-11 8.75561E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -61.281326780115748 diff --git a/tests/testthat/testData/nonmem/xgxr011.ext b/tests/testthat/testData/nonmem/xgxr011.ext new file mode 100644 index 00000000..1cdb2d7a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr011.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1627.9920332767449 + 20 1.76648E-01 4.20000E-02 7.15024E-01 1.71101E-01 5.49437E+02 1.10110E-01 0.00000E+00 1.31583E-03 1.81514E-01 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0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr011.phi b/tests/testthat/testData/nonmem/xgxr011.phi new file mode 100644 index 00000000..64d41351 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr011.phi @@ -0,0 +1,152 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 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0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr012.ext b/tests/testthat/testData/nonmem/xgxr012.ext new file mode 100644 index 00000000..1cdb2d7a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr012.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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0.00000E+00 9.62233E-03 -1.89488E-05 1.26180E-02 -2.24746E-05 1.34713E-04 1.68786E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -0.48979340915520642 + 139 169 -4.42443E-01 2.01205E-01 -6.31600E-04 0.00000E+00 0.00000E+00 1.29679E-02 -2.66610E-03 1.08810E-02 -2.25440E-05 1.41519E-04 1.68750E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.0454080870046631 + 140 170 4.94423E-01 -6.53386E-01 1.07783E-03 0.00000E+00 0.00000E+00 1.46573E-02 -2.65658E-03 1.36834E-02 -2.15925E-05 1.38074E-04 1.68766E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -7.0489252841729151 + 141 171 -6.81870E-01 2.57293E-01 -4.81046E-04 0.00000E+00 0.00000E+00 1.78333E-02 -5.63613E-03 1.17639E-02 -1.68986E-05 1.47167E-04 1.68758E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.550068144085365 + 142 172 6.73135E-01 -6.40015E-01 1.07024E-03 0.00000E+00 0.00000E+00 1.37519E-02 -1.41512E-03 1.40031E-02 -2.54619E-05 1.35820E-04 1.68747E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -4.6787341907728095 + 143 173 5.81679E-01 -8.97709E-02 6.20592E-04 0.00000E+00 0.00000E+00 9.51255E-03 4.51926E-06 1.30868E-02 -2.53901E-05 1.31067E-04 1.68763E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.7330466350554861 + 144 174 -2.91158E-01 3.10944E-01 -5.84275E-04 0.00000E+00 0.00000E+00 1.07101E-02 -1.08858E-03 1.03875E-02 -1.71512E-05 1.44916E-04 1.68746E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.27096092439649966 + 145 175 5.44187E-01 -1.30530E-01 6.31234E-04 0.00000E+00 0.00000E+00 1.01090E-02 2.91664E-04 1.28339E-02 -1.92203E-05 1.40156E-04 1.68789E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.92770605825398511 + 146 176 -4.77868E-01 3.38488E-01 -3.63273E-04 0.00000E+00 0.00000E+00 1.42678E-02 -2.01728E-03 1.10209E-02 -1.34182E-05 1.47735E-04 1.68794E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -5.0688323966476805 + 147 177 -2.96820E-01 -3.98608E-03 1.10159E-04 0.00000E+00 0.00000E+00 1.19290E-02 -2.01863E-03 1.10410E-02 -2.06323E-05 1.40475E-04 1.68751E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -14.007504198691619 + 148 178 -1.33686E-01 2.03720E-01 -1.12000E-04 0.00000E+00 0.00000E+00 9.70711E-03 -6.10176E-04 1.07895E-02 -2.00539E-05 1.40013E-04 1.68752E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -3.4886004354478679 + 149 179 -1.99830E-01 4.69830E-01 4.87792E-04 0.00000E+00 0.00000E+00 8.98678E-03 -3.06842E-04 1.05953E-02 -2.19262E-05 1.38440E-04 1.68748E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.3794396384410836 + 150 180 1.99795E-01 -6.33510E-01 6.76746E-04 0.00000E+00 0.00000E+00 1.49040E-02 -2.95004E-03 1.29816E-02 -1.51644E-05 1.42921E-04 1.68795E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr013.ext b/tests/testthat/testData/nonmem/xgxr013.ext new file mode 100644 index 00000000..23f5b053 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr013.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3213.2115507137487 + 10 1.57184E-01 3.51750E-01 1.55239E+01 7.96611E-01 6.64882E+01 1.32859E-01 0.00000E+00 3.68515E-03 1.29123E-01 0.00000E+00 7.22425E-02 0.00000E+00 0.00000E+00 1.02983E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1093.2435106321011 + 20 1.91890E-01 4.53648E-02 8.54457E-01 2.28645E-01 1.46432E+02 9.19046E-02 0.00000E+00 3.23295E-03 2.59550E-01 0.00000E+00 1.03961E-01 0.00000E+00 0.00000E+00 3.22964E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1353.2720773689355 + 30 1.92640E-01 5.24423E-02 9.79527E-01 2.60592E-01 6.76061E+03 9.29482E-02 0.00000E+00 3.02716E-03 2.64135E-01 0.00000E+00 1.37294E-01 0.00000E+00 0.00000E+00 4.82200E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0427517146463 + 40 1.92648E-01 4.85713E-02 9.05086E-01 2.40212E-01 2.40512E+04 9.30614E-02 0.00000E+00 3.01998E-03 2.65858E-01 0.00000E+00 1.39197E-01 0.00000E+00 0.00000E+00 1.19353E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0594247948363 + 50 1.92475E-01 5.20954E-02 9.71823E-01 2.57962E-01 1.23497E+06 9.30645E-02 0.00000E+00 3.02492E-03 2.65137E-01 0.00000E+00 1.38773E-01 0.00000E+00 0.00000E+00 6.76127E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0644377170283 + 57 1.92512E-01 5.22056E-02 9.74111E-01 2.58547E-01 4.54769E+07 9.30880E-02 0.00000E+00 3.02246E-03 2.65217E-01 0.00000E+00 1.38722E-01 0.00000E+00 0.00000E+00 3.53597E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0652415802017 + -1000000000 1.92512E-01 5.22056E-02 9.74111E-01 2.58547E-01 4.54769E+07 9.30880E-02 0.00000E+00 3.02246E-03 2.65217E-01 0.00000E+00 1.38722E-01 0.00000E+00 0.00000E+00 3.53597E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1356.0652415802017 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.05103E-01 0.00000E+00 5.49769E-02 5.14993E-01 0.00000E+00 3.72454E-01 0.00000E+00 0.00000E+00 5.94640E-03 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 3.80000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr013.phi b/tests/testthat/testData/nonmem/xgxr013.phi new file mode 100644 index 00000000..9bcbbfce --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr013.phi @@ -0,0 +1,92 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 91 5.44255E-01 3.81834E-01 -1.23304E-04 0.00000E+00 0.00000E+00 6.69676E-02 -3.58486E-02 3.80111E-02 -2.39939E-06 2.74825E-05 3.53500E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -11.270434303925709 + 2 92 -2.73824E-01 2.10225E-03 -2.66381E-05 0.00000E+00 0.00000E+00 1.06452E-01 -6.27338E-02 6.69709E-02 1.02026E-05 1.86355E-05 3.53537E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -27.577577250584770 + 3 93 9.27009E-02 -2.26510E-01 9.68180E-05 0.00000E+00 0.00000E+00 1.11661E-01 -6.82311E-02 7.10308E-02 1.00919E-05 1.75392E-05 3.53537E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -20.530829418347963 + 4 94 -1.53527E-01 -1.55351E-01 2.37374E-05 0.00000E+00 0.00000E+00 1.22786E-01 -7.24291E-02 8.04902E-02 1.25784E-05 1.45028E-05 3.53551E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -16.503121548805112 + 5 95 -1.09829E-01 -4.91742E-03 -2.47634E-05 0.00000E+00 0.00000E+00 9.24808E-02 -4.97011E-02 5.49399E-02 7.93943E-06 2.16632E-05 3.53530E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -30.184051027126916 + 6 96 -9.42122E-02 -8.69692E-02 -9.97212E-06 0.00000E+00 0.00000E+00 1.15370E-01 -7.11971E-02 7.53361E-02 1.16547E-05 1.63366E-05 3.53542E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -19.781769031286608 + 7 97 -7.77129E-02 -1.76726E-01 4.97301E-05 0.00000E+00 0.00000E+00 1.24647E-01 -7.01705E-02 7.53262E-02 1.30350E-05 1.61740E-05 3.53549E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -17.786860978151712 + 8 98 -4.27970E-01 3.76983E-01 -1.16802E-04 0.00000E+00 0.00000E+00 7.31519E-02 -4.18134E-02 4.82706E-02 4.35841E-06 2.32543E-05 3.53522E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -37.726617066488316 + 9 99 6.97926E-02 1.22713E-01 -5.05195E-05 0.00000E+00 0.00000E+00 8.28567E-02 -4.52750E-02 4.80213E-02 4.25986E-06 2.40793E-05 3.53515E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -24.759553898630760 + 10 100 -2.40788E-01 -2.10064E-01 5.04686E-05 0.00000E+00 0.00000E+00 1.32651E-01 -7.20341E-02 8.14705E-02 1.39347E-05 1.44637E-05 3.53552E-05 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -18.398002811180049 + 11 101 2.27841E-01 -6.95701E-02 3.28443E-05 0.00000E+00 0.00000E+00 1.07927E-01 -6.19966E-02 6.26138E-02 7.92335E-06 2.04023E-05 3.53527E-05 0.00000E+00 0.00000E+00 0.00000E+00 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Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 3640.3406859895140 + 10 1.26520E-01 1.94476E-01 2.57211E+00 1.95064E-01 0.00000E+00 4.84739E-04 8.38617E-02 0.00000E+00 8.83936E-02 0.00000E+00 0.00000E+00 8.83833E-02 -1701.4907129330345 + 20 1.27183E-01 4.20000E-02 6.15498E-01 1.99552E-01 0.00000E+00 4.09364E-04 7.82475E-02 0.00000E+00 3.07496E-02 0.00000E+00 0.00000E+00 3.69032E-02 -1726.7461305503964 + -1000000000 1.27183E-01 4.20000E-02 6.15498E-01 1.99552E-01 0.00000E+00 4.09364E-04 7.82475E-02 0.00000E+00 3.07496E-02 0.00000E+00 0.00000E+00 3.69032E-02 -1726.7461305503964 + -1000000004 0.00000E+00 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100644 index 00000000..1cdb2d7a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr015.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5379311717293 + 50 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + 52 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + -1000000000 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + -1000000004 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b/tests/testthat/testData/nonmem/xgxr015.phi new file mode 100644 index 00000000..64d41351 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr015.phi @@ -0,0 +1,152 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 31 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 2 32 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.3794396384410836 + 150 180 1.99795E-01 -6.33510E-01 6.76746E-04 0.00000E+00 0.00000E+00 1.49040E-02 -2.95004E-03 1.29816E-02 -1.51644E-05 1.42921E-04 1.68795E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr017.ext b/tests/testthat/testData/nonmem/xgxr017.ext new file mode 100644 index 00000000..1cdb2d7a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr017.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) 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First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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b/tests/testthat/testData/nonmem/xgxr018.phi @@ -0,0 +1,152 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + SUBJECT_NO ID ETA(1) ETA(2) ETA(3) ETA(4) ETA(5) ETC(1,1) ETC(2,1) ETC(2,2) ETC(3,1) ETC(3,2) ETC(3,3) ETC(4,1) ETC(4,2) ETC(4,3) ETC(4,4) ETC(5,1) ETC(5,2) ETC(5,3) ETC(5,4) ETC(5,5) OBJ + 1 31 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 2 32 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + 3 33 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1627.9920332767449 + 20 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0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git a/tests/testthat/testData/nonmem/xgxr020.phi b/tests/testthat/testData/nonmem/xgxr020.phi new file mode 100644 index 00000000..64d41351 --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr020.phi @@ -0,0 +1,152 @@ +TABLE NO. 1: First Order 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1.42921E-04 1.68795E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr021.ext b/tests/testthat/testData/nonmem/xgxr021.ext new file mode 100644 index 00000000..1cdb2d7a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr021.ext @@ -0,0 +1,13 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1627.9920332767449 + 20 1.76648E-01 4.20000E-02 7.15024E-01 1.71101E-01 5.49437E+02 1.10110E-01 0.00000E+00 1.31583E-03 1.81514E-01 0.00000E+00 8.14091E-02 0.00000E+00 0.00000E+00 3.64331E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1948.5917421346710 + 30 1.81307E-01 4.20000E-02 7.24727E-01 1.78566E-01 5.93977E+03 1.05897E-01 0.00000E+00 1.39363E-03 2.10019E-01 0.00000E+00 1.21236E-01 0.00000E+00 0.00000E+00 4.71800E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5266144759369 + 40 1.81213E-01 4.20000E-02 7.24668E-01 1.78622E-01 1.94740E+04 1.05944E-01 0.00000E+00 1.39502E-03 2.10111E-01 0.00000E+00 1.21579E-01 0.00000E+00 0.00000E+00 2.58467E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5379311717293 + 50 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + 52 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + -1000000000 1.81196E-01 4.20000E-02 7.24569E-01 1.78477E-01 2.30745E+06 1.05902E-01 0.00000E+00 1.39280E-03 2.09981E-01 0.00000E+00 1.21443E-01 0.00000E+00 0.00000E+00 1.69050E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1951.5428028214183 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.25425E-01 0.00000E+00 3.73202E-02 4.58237E-01 0.00000E+00 3.48487E-01 0.00000E+00 0.00000E+00 1.30019E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -1627.9920332767449 + 20 1.76648E-01 4.20000E-02 7.15024E-01 1.71101E-01 5.49437E+02 1.10110E-01 0.00000E+00 1.31583E-03 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0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr023.ext b/tests/testthat/testData/nonmem/xgxr023.ext new file mode 100644 index 00000000..e898954a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr023.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 2.00000E-01 1.00000E-01 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 1.00000E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3516.4431139555363 + 10 1.55436E-01 2.66756E-01 6.71638E+00 1.34873E+00 9.92935E+01 3.09358E-01 0.00000E+00 2.60872E-03 4.10557E-02 0.00000E+00 9.17980E-02 0.00000E+00 0.00000E+00 7.86386E-01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 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6.76746E-04 0.00000E+00 0.00000E+00 1.49040E-02 -2.95004E-03 1.29816E-02 -1.51644E-05 1.42921E-04 1.68795E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220003546375118 diff --git a/tests/testthat/testData/nonmem/xgxr027.ext b/tests/testthat/testData/nonmem/xgxr027.ext new file mode 100644 index 00000000..e898954a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr027.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) OMEGA(4,1) OMEGA(4,2) OMEGA(4,3) OMEGA(4,4) OMEGA(5,1) OMEGA(5,2) OMEGA(5,3) OMEGA(5,4) OMEGA(5,5) OBJ + 0 9.00000E-01 4.20000E+00 3.60000E+00 5.81000E+00 3.44000E+00 2.00000E-01 0.00000E+00 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0.00000E+00 -1951.5426163117882 + -1000000004 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 3.25536E-01 0.00000E+00 3.73238E-02 4.58243E-01 0.00000E+00 3.48488E-01 0.00000E+00 0.00000E+00 1.30302E-02 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 + -1000000006 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 0.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 0.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 1.00000E+00 0.0000000000000000 + -1000000007 0.00000E+00 3.70000E+01 4.00000E+01 4.40000E+01 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.0000000000000000 diff --git 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1.39046E-04 1.69482E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 7.3616933819720991 + 150 180 1.99814E-01 -6.33293E-01 6.79402E-04 0.00000E+00 0.00000E+00 1.49106E-02 -2.95079E-03 1.29876E-02 -1.52091E-05 1.43544E-04 1.69529E-04 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 0.00000E+00 -13.220066070713692 diff --git a/tests/testthat/testData/nonmem/xgxr028.ext b/tests/testthat/testData/nonmem/xgxr028.ext new file mode 100644 index 00000000..10093b1a --- /dev/null +++ b/tests/testthat/testData/nonmem/xgxr028.ext @@ -0,0 +1,12 @@ +TABLE NO. 1: First Order Conditional Estimation with Interaction: Goal Function=MINIMUM VALUE OF OBJECTIVE FUNCTION: Problem=1 Subproblem=0 Superproblem1=0 Iteration1=0 Superproblem2=0 Iteration2=0 + ITERATION THETA1 THETA2 THETA3 THETA4 THETA5 SIGMA(1,1) SIGMA(2,1) SIGMA(2,2) OMEGA(1,1) OMEGA(2,1) OMEGA(2,2) OMEGA(3,1) OMEGA(3,2) OMEGA(3,3) 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