Running the package on sample model data on iCloud

[cmartinezvil]

Hi all, I'm trying to learn how to use the package as a way to learn how to implement my POD. I'm following section 1.2.5 (and previous ones) of the MDTF Getting Started Document (https://mdtf-diagnostics.readthedocs.io/en/latest/_static/MDTF_getting_started.pdf). I installed the MDTF package on my iCloud (I don't have much space left in my computer) which has given me many issues trying to run this package. Basically I'm typing section 1.2.5

% cd <CODE_ROOT>
% ./mdtf -f src/default_tests.jsonc

and I get the errors shown at the bottom of the page. The errors seem to occur due to the way the iCloud path (Library/Mobile Documents/comappleCloudDocs) is configured (it has a space between Mobile and Documents). I modified the paths in default_tests.jsonc but that doesn't seem to be the problem. The main issues apparently occurs in conda_init.sh and the fact that the framework cannot find conda (I did mofify the conda_root in default_tests.jsonc to my local installation /Users/cristianmartinez/anaconda3 to no avail). I'm pretty sure this should be easy to fix, but I'm not experienced enough in this kind of programming to find a solution. Any help would be much appreciated. The errors are given below.

"ERROR: run_shell_command on /Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/conda/conda_init.sh (pid 95574) exit status=127:
/bin/bash: /Users/cristianmartinez/Library/Mobile: No such file or directory

ERROR: Can't find conda.
Traceback (most recent call last):
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/environment_manager.py", line 166, in init
self.conda_dir, paths.get('conda_root','')
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/util/processes.py", line 193, in run_shell_command
returncode=retcode, cmd=command, output=stderr)
src.util.exceptions.MDTFCalledProcessError: Command '/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/conda/conda_init.sh ' returned non-zero exit status 127.
CRITICAL: **********************************************************************
Uncaught exception:
Traceback (most recent call last):
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/mdtf_framework.py", line 66, in
exit_code = main()
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/mdtf_framework.py", line 62, in main
exit_code = framework.main()
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/core.py", line 273, in main
run_mgr = self.RuntimeManager(case.pods, self.EnvironmentManager)
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/environment_manager.py", line 404, in init
self.env_mgr = EnvMgrClass()
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/environment_manager.py", line 166, in init
self.conda_dir, paths.get('conda_root','')
File "/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/util/processes.py", line 193, in run_shell_command
returncode=retcode, cmd=command, output=stderr)
src.util.exceptions.MDTFCalledProcessError: Command '/Users/cristianmartinez/Library/Mobile Documents/comappleCloudDocs/Research/mdtf/MDTF-diagnostics/src/conda/conda_init.sh ' returned non-zero exit status 127."