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h5tovtk not picking up datasets #7

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RupeshRad opened this issue Apr 12, 2018 · 3 comments
Open

h5tovtk not picking up datasets #7

RupeshRad opened this issue Apr 12, 2018 · 3 comments

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@RupeshRad
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I have a test.h5 file which contains multiple datasets. Each dataset has unique name such as(cod90_componenty_Aodes_odesAll_85,cod10_componentz_Aodes_odesAll_85 etc) and each dataset is under different groups and subgroups.

I have installed Cygwin and I am trying to do this conversion. But I am getting the following error.
Do we have to create the datasets in any particular format so that it gets picked up when I run 'h5tovtk test.h5' command?

Error message:
h5tovtk error: couldn't find data set in HDF5 file

@anastasia-r
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I'm getting the same error, is there any resolution to this?

@stevengj
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stevengj commented Sep 12, 2019

What happens if you explicitly specify the dataset, e.g. h5tovtk test.h5: cod90_componenty_Aodes_odesAll_85

You can also run h5ls test.h5 to double-check the structure of the HDF5 file, e.g. maybe all of the datasets are buried in some hierarchical group structure?

@lkuna24
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lkuna24 commented Jun 7, 2021

I am also getting a similar error. running h5ls returns:
micro Group

Not sure where to go from here as h5tovtk test.h5: micro/gID where gID is a dataset, also returns the same error.

EDIT: h5tovtk test.h5:micro/gID no spaces worked. Thanks for this tool!

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4 participants