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Files needed/wrong file names #45

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IKDRipp opened this issue Sep 28, 2018 · 0 comments
Open

Files needed/wrong file names #45

IKDRipp opened this issue Sep 28, 2018 · 0 comments

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@IKDRipp
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IKDRipp commented Sep 28, 2018

We have now:

media/user/external/Projects/MRPET15_Final/out/first_/Subj/mrpet/std_template
wpet_recon_rbv_pvc.nii → in MNI PVC PET using SPM PET template
wpet_recon_rbv_pvc_intnormed.nii → MNI PVC PET with signal normalization to grey matter using SPM PET template
pet_recon_grptemplate.nii → should be standard template in MNI space
wtissues_brain_mask.nii

media/user/external/Projects/MRPET15_Final/out/first_/Subj/mrpet
Hammers_mith_atlas_n30r83_SPM5_pet_recon.nii → in PET space
Head_MPRAGE_highContrast_pet_recon.nii → in PET space
pet_recon_pvc_norm.nii.gz → Pet spaced & signal normlalized to gm
/media/iripp/seagate_external/Projects/MRPET15_Final/out/first_/Subj/pet
pet_recon_mni.nii → MNI spaced using SPM PET template
media/user/external/Projects/MRPET15_Final/out/first_/Subj/pet/grp_template
pet_recon_grptemplate.nii → MNI space, but cropped!
WE NEED:

  1. pet_recon_grptemplate.nii with pvc
  2. pet_recon_grptemplate.nii with pvc & gm normalization
  3. pet_recon_grptemplate.nii with gm normalization
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