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Add Brainstorm #116

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CodyCBakerPhD opened this issue Jul 27, 2023 · 3 comments
Open

Add Brainstorm #116

CodyCBakerPhD opened this issue Jul 27, 2023 · 3 comments
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tools proposals to add NWB-related tools to glossary

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@CodyCBakerPhD
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Thomas pointed out this tool for us https://neuroimage.usc.edu/brainstorm/Introduction

Apparently it can read NWB files!

@oruebel
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oruebel commented Jul 28, 2023

Brainstorm was one of the earlier tools that had added support for NWB. If I remember correctly, it had (temporarily) dropped NWB support because of issues with supporting different versions of NWB in MatLab. Great to see that Brainstorm supports NWB again. It's a powerful tool.

@rly
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rly commented Nov 20, 2023

I just tested Brainstorm again and can confirm that it can indeed read NWB files with ephys data. However, besides visualizing the data, I cannot get Brainstorm to do anything on the data, such as spike sorting, lfp filtering, or computing spike triggered averages. I reported this here https://neuroimage.usc.edu/forums/t/cannot-run-spike-sorting-ephys-tutorials/43182

@rly
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rly commented Nov 20, 2023

It looks like Brainstorm chokes when it encounters neurodata types that it is not familiar with, like an ImageSeries:
image . I tried with several NWB files from different dandisets.

We might need to work with them to improve support before listing Brainstorm on the overview page.

@stephprince stephprince added the tools proposals to add NWB-related tools to glossary label Nov 21, 2024
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