diff --git a/HCK19_2024_Janelia_NDRH/README.md b/HCK19_2024_Janelia_NDRH/README.md new file mode 100644 index 000000000..40e843ee5 --- /dev/null +++ b/HCK19_2024_Janelia_NDRH/README.md @@ -0,0 +1,127 @@ +NeuroDataReHack banner + +# NeuroDataReHack 2024 +## *Generate new insights from existing neurophysiology data through secondary analysis* + +* [Report](#report) +* [Dates and Location](#dates-and-location) +* [Objective](#objective) +* [Eligibility](#eligibility) +* [Application](#application) +* [Logistics](#logistics) +* [Organizing Committee](#organizing-committee) +* [Resources](#resources) +* [What to bring?](#what-to-bring) +* [Disclaimer](#disclaimer) + + +## Dates and Location + +- **Dates:** July 8-12, 2024 +- **Location:** [HHMI Janelia Research Campus](https://www.janelia.org/), 19700 Helix Dr, Ashburn, VA 20147, + [Openstreetmap](https://www.openstreetmap.org/?mlat=39.0708&mlon=-77.4655#map=14/39.0708/-77.4655) + [Directions](https://www.janelia.org/directions) + +## Objective +[The DANDI Archive](http://dandiarchive.org) now has 199+ neurophysiology datasets in the +[Neurodata Without Borders](http://nwb.org) format spanning many species, brain areas, task types, and imaging +modalities. These include high-value datasets, e.g. from [Allen Institute OpenScope](https://dandiarchive.org/dandiset/search?search=openscope), the [MICrONS project](https://dandiarchive.org/dandiset/000402), and the +[International Brain Laboratory Brain Wide Map](https://dandiarchive.org/dandiset/000409), as well as diverse contributions from neuroscience labs around the world. In this +workshop, we will teach attendees about the open neurophysiology datasets available on the DANDI Archive and train +them on how to maximally utilize the archive and the NWB standard to incorporate existing data into their scientific +workflows. Feedback from attendees will be used to improve the software and data standard to better enable +reanalysis workflows. + + + +Example projects include but are not limited to: +* Determine whether your result is present in another species or brain area. +* Showcase the capabilities of your tool or analysis on existing data from another lab. +* Explore follow-up questions to a study. +* Create educational content that uses open data. + + +This event will primarily focus on analyzing existing data in NWB and on DANDI, **not** converting data to NWB. If +you are interested in learning how to convert data, consider signing up for an NWB User Days event. + +## Eligibility + +This course is intended for PhD students, postdoctoral researchers, principal investigators, or similar. +Applicants should have basic programming experience in Python or MATLAB and experience with neurophysiology research. + + +## Application + +Space for the event is limited. Apply to attend NeuroDataReHack 2024 [here](https://forms.gle/tzumwuVgrkdD4zm36). + +* Application deadline: March 1 +* Notification of admission decisions: April 1 + +## Logistics + +Thanks to the generous sponsorship of The Janelia Research Campus, this event will be free to participants: +* There is no registration or application fee. +* Participants will be provided a private room at Janelia Research Campus for the duration of this event, + checking in on Sunday, July 7, and checking out on Friday, July 12 or Saturday, July 13. +* Breakfast, lunch, dinner, and coffee breaks will be provided. +* You will be responsible for booking your own flight and transportation to Janelia Research Campus. +* You will be responsible for determining visa and/or healthcare requirements for travel to the United States. + +## Organizing Committee + +**Program chairs:** +* Benjamin Dichter, CatalystNeuro +* Oliver Rübel, Lawrence Berkeley National Laboratory +* Ryan Ly, Lawrence Berkeley National Laboratory + +## Resources + +Resources will be posted here to help participants prepare for the event. + +* A report of the first NeuroDataReHack event: ([PDF](../HCK14_2022_Seattle_RH/report/Report_Neurodata_Rehack_v2.pdf)) +* A report of the second NeuroDataReHack event: ([PDF](../HCK16_2023_Granada_RH/report/Report__NeuroDataReHack_2023.pdf)) +* Recordings of talks will be made available on the [NWB Youtube channel](https://www.youtube.com/channel/UCfD_mU-EFz135a9TpNFJP5A). + +## What to bring? + +Bring a laptop with appropriate software installed. Python should be installed and MATLAB is optional. For +instructions on how to install PyNWB, see +[the PyNWB documentation](https://pynwb.readthedocs.io/en/stable/install_users.html#installing-pynwb). For instructions +on how to install MatNWB, see +[the MatNWB documentation](https://github.com/NeurodataWithoutBorders/matnwb/blob/master/README.md) + + + +## Disclaimer + +This website and related content were prepared as an account of or to expedite work sponsored at least in part by +the United States Government. While we strive to provide correct information, neither the United States Government +nor any agency thereof, nor The Regents of the University of California, nor any of their employees, makes any +warranty, express or implied, or assumes any legal responsibility for the accuracy, completeness, or usefulness of +any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately +owned rights. + +Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer, +or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United +States Government or any agency thereof, or The Regents of the University of California. Use of the Laboratory or +University’s name for endorsements is prohibited. + +The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States +Government or any agency thereof or The Regents of the University of California. Neither Berkeley Lab nor its +employees are agents of the US Government. + +Berkeley Lab web pages link to many other websites. Such links do not constitute an endorsement of the content or +company and we are not responsible for the content of such links. diff --git a/HCK19_2024_Janelia_NDRH/images/NDRH2024_banner.png b/HCK19_2024_Janelia_NDRH/images/NDRH2024_banner.png new file mode 100644 index 000000000..5a700e943 Binary files /dev/null and b/HCK19_2024_Janelia_NDRH/images/NDRH2024_banner.png differ diff --git a/README.md b/README.md index 42a9e2dc0..f5e176492 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ - [Cosyne: February 2024](Cosyne_2024/README.md) - A tutorial session on NWB and DANDI will be held during the Computational and Systems Neuroscience (COSYNE) 2024 conference in Lisbon, Portugal on **February 29, 2024**. - [NWB Developer Hackathon: April 2024](HCK18_2024_Dev_Hackathon_DataJoint/README.md): **April 17 - 19, 2023** at DataJoint Headquarters in Houston, TX, USA -- NeuroDataReHack: July 2024 - NeuroDataReHack 3 will be held at HHMI Janelia Research Campus in Ashburn, Virginia, USA **July 8-12, 2024**. +- [NeuroDataReHack: July 2024](HCK19_2024_Janelia_NDRH/README.md) - NeuroDataReHack 3 will be held at HHMI Janelia Research Campus in Ashburn, Virginia, USA **July 8-12, 2024**. ### Past Events