requirements-doc.txt

# dependencies to generate the documentation for PyNWB and test run the sphinx gallery examples that do not require
# ROS3 support in h5py. For those examples, use the conda env specified in environment-ros3.yml
sphinx>=4  # improved support for docutils>=0.17
sphinx_rtd_theme>=1  # <1 does not work with docutils>=0.17
matplotlib
sphinx-gallery
# allensdk>=2.13.2  # allensdk reinstalls pynwb and hdmf. TODO set up a separate workflow to test allensdk
# MarkupSafe==2.0.1  # resolve incompatibility between jinja2 and markupsafe: https://github.com/AllenInstitute/AllenSDK/issues/2308
Pillow
sphinx-copybutton
dataframe_image   # used to render large dataframe as image in the sphinx gallery to improve html display
lxml  # used by dataframe_image when using the matplotlib backend
hdf5plugin
dandi>=0.46.6
hdmf-zarr>=0.3.0
zarr<3  # limited to zarr<3 until hdmf-zarr resolves issues with zarr 3.0
linkml-runtime==1.7.4; python_version >= "3.10"
schemasheets==0.2.1; python_version >= "3.10"
oaklib==0.5.32; python_version >= "3.10"