WARNING: Skipped spectra with invalid precursor info

[lutfia95]

Hey,

in which cases are the spectra skipped due to invalid precursor info? I have dataset which contains some not cleaned data and not sure if there is any way to clean/pre-process it.

Best,
Ahmad

[wsnoble]

Casanovo will skip spectra for two reasons:

1. The charge state is larger than the maximum allowed charge state (as per max_charge), or

2. The spectrum itself is misformatted and can't be parsed.

We are working on adding a threshold for the minimum number of peaks configurable here and on giving more details about the skipped spectra.