CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

0.25.2 - 2023-01-09

• Use correct minimums for huge & large mem nodes in 114.

0.25.1 - 2023-01-09

• Allow for partial nodes huge & large mem nodes in 113.

0.25.0 - 2022-12-16

• Added c18 options back in 111.
• Use brwap instead of singularity in 112.

0.24.1 - 2022-10-08

• Removed c18 options in 110.

0.24.0 - 2022-12-01

• Added support for R/4.2.1 in 109.
• Fixed ascend's max cpu in 107.

0.23.2 - 2020-10-24

• Fixed min & max for ascend to be 88 instead of 96 in 106.

0.23.1 - 2020-10-24

• Fixed min & max for ascend and update form labels for R version in 105.

0.23.0 - 2020-10-20

• Added support for Ascend cluster in 104.

0.22.0 - 2020-06-16

Added

• Added support for apptainer in 103.

Changed

• 102 changed node selector to the new k8s pattern.

0.21.9 - 2020-02-09

Fixed

• 99 disables R/4.1.0 in k8s even though it adds a lot of things to get 4.1.0 to work. See PR for details.

0.21.2 - 0.21.8

Lot's of PRs made quickly in this timeframe to get 4.1.0 to actually work with Rstudio 2021.09.

[0.21.1] - 2022-01-21

Fixed

• Fixed R app_rstudio/4.1.0 module in 91.

[0.21.0] - 2022-01-04

Added

• Added R 4.1.0 in 89.

0.20.0 - 2012-12-15

Changed

• Use OnDemand's built-in dynamic javascript in 87.

0.19.6 - 2012-08-27

Changed

• cluster label is now osc.edu/cluster in 78

0.19.5 - 2012-08-19

Fixed

• 76 fixed an issue with classrooms where classrooms (the version attribute) was being hidden. Default now is to show everything and one has to explicitly set items to false for it to be hidden.

Changed

• 75 Changed memory limits for hyperthreaded kubernetes nodes.

0.19.4 - 2021-08-18

Fixed

• 73 fixed a bug where classrooms could not determine the current cluster for toggling email notifications.

0.19.3 - 2021-08-02

Fixed

• classrooms can now start without the project space directories in 71.

0.19.2 - 2021-07-23

Changed

• Changed the container image to 0.2.0 in 69

0.19.1 - 2021-07-12

Fixed

• Fixed classrooms to use the right Singularity home in 68.
• Fixed k8s clusters clearing the cores field in 66.

Changed

• Simplified the title in 67.

0.19.0 - 2021-07-09

Added

• 64 added support for kubernetes clusters.

0.18.1 - 2021-01-20

Added

• 62 added the ability for classrooms to populate class materials in the users' home directory if OSC_CLASS_FILES is set.

0.18.0 - 2021-01-20

Changed

• 61 removed unused owens-slurm data attributes
• 60 changed the account field to be a select widget with only valid groups as options

Added

• 56 aloows users to load modules within the rstudio-server session

0.17.0 - 2020-12-28

Changed

• Removed owens-slurm cluster and torque related configs in 55

0.16.0 - 2020-11-18

Fixed

• Some misspellings 50

Added

• Added the owens-slurm cluster to begin migrating Owens to Slurm in 51.

0.15.1 - 2020-09-21

Fixed

• 49
  • broken links in help message
  • scheduling on owens hugemem
  • versions now show in production deployments

0.15.0 - 2020-09-21

Changed

• PR 48 pitzer-exp merged into the pitzer cluster
  • Removed pitzer-exp as an option.
  • Created new node type pitzer options to accommodate pitzer-exp merging into pitzer
  • Changed the help text for node types
  • logic for handling submitting blank cores is again in the submit.yml.erb instead of the javascript.

0.14.0 - 2020-08-27

Added

• support for owens, pitzer and pitzer expansion clusters
  • Added javascript to toggle the select options (node_type and version availability are different across clusters).
  • PR 45 merged this app with pitzer
  • PR 46 added the pitzer expansion cluster

Changed

• javascript now populates the num_cores if it's blank (instead of populating in the submit.yml.erb).
• min/max number of cores available for a given node type are now found in the data attributes instead of being purely defined in javascript.
• min cores is 1 instead of 0.

0.13.0 - 2020-07-31

Added

• added R module 4.0.2

Fixed

• toggle_visibility now kicks out of the element to toggle is not found. This is when we try to toggle tutorials in a reconfigured app (stat.osc.edu) that does not have the tutorial checkbox

[0.12.4] - 2020-07-16

Fixed

• Fixed a bug where Rstudio could not create $HOME/.rstudio. We're now back to the rstudio_launcher/centos7 module where we mount /etc entirely.

0.12.3 - 2020-07-13

Fixed

• Specify TZ to get rid of warnings in Sys.timezone() #39

0.12.2 - 2020-07-10

Changed

• Create a markdown file in a class directory #38

0.12.1 - 2020-07-10

Fixed

• Create SINGULARTIY_HOME in case it doesn't already exist

0.12.0 - 2020-07-09

Changed

• Changed the way tutorials change HOME directory from mounting the session (the old way) to changing SINGULARITY_HOME (the new way). This is to support the stragey classes will use #36.

0.11.7 - 2020-06-19

Changed

• Workshop materials are loaded for 3.6.1 and 3.6.3 from their respective directories
• RPM writes out version file so it can be shown in the UI

0.11.6 - 2020-05-22

Changed

• Workshop materials are available for 3.6.1 and 3.6.3.

0.11.5 - 2020-05-20

Changed

• removed the way env gets written and read. It didnt work due to wrong paths and when it could find the file, it is not formatted correctly besides.

Added

loads R_LIBS_SITE environment variable if it is set.

0.11.4 - 2020-03-31

Fixed

• Fixed switch statement in submit

0.11.3 - 2020-03-30

Fixed

• submit.yml.erb actually submits to gpu nodes.

0.11.2 - 2020-03-25

Added

• R version 3.6.3 can now use GPU nodes

0.11.1 - 2020-03-24

Changed

• Gitlab ci uses clone instead of fetch

0.11.0 - 2020-03-24

Added

• Added R version 3.6.3 which is now a module supplied by SciApps that has all the dependencies

Changed

• Moved texlive module to the form.yml because moving forward it is being included in the module itself.

0.10.0 - 2020-01-13

Added

• Added loading the texlive module so users can create and save Markdown R files.

0.9.1 - 2020-01-02

Fixed

• Fixed bug where workshop mode would not be activated when requested

Changed

• Changed label for workshop mode to better describe the sandbox

0.9.0 - 2020-01-02

Added

• Added JS to ensure that the tutorial control is only shown if R version 3.6.1 is selected
• Workshop mode sets a custom R_LIBS_USER

0.8.8 - 2019-12-20

Fixed

• Fix breaking changes with the way Singularity 3.5.x handles environment variables

0.8.7 - 2019-12-17

Fixed

• Fixed bug which prevented running simultaneous tutorial sessions

0.8.6 - 2019-12-09

Fixed

• Fixed bug where RStudio's history was not cleared when tutorial mode was selected

0.8.5 - 2019-12-04

Added

• Added R 3.6.1
• Added controls to access tutorial materials

0.8.4 - 2019-10-11

Changed

• Removed hardcoded fix that shadowed the module variables

0.8.3 - 2019-10-10

Fixed

• Fixed crash relating to duplicate bind mounts including /etc caused by OSC singularity.conf

0.8.2 - 2019-06-28

Added

• Added import of xalt to improve software metrics

Fixed

• Fixed incompatibilities with older R's and newer Intels

0.8.1 - 2019-06-26

Fixed

• Fixed load ordering of mkl module

0.8.0 - 2019-06-18

Added

• Added R 3.6.0

0.7.0 - 2019-04-26

Changed

• Changed Intel compiler version from 16.0.3 to 18.0.3

0.6.2 - 2018-02-21

Changed

• Replace the Proot dependency with Singularity

Fixed

• Fix the PPN frontend behavior to permit a blank field

0.6.1 - 2018-01-09

Added

• JS to enforce the PPN limits per node type

0.6.0 - 2018-08-02

Added

• A method to optionally set non-standard versions of R to be used with RStudio Server.
• Added R 3.5.0 as an option

0.5.0 - 2018-04-18

Added

• Added debug queue as an option.
• Users can now specify number of cores on the node.

Changed

• Changed server timeout to 120 seconds to account for running on shared node.

0.4.0 - 2018-03-28

Added

• Add support for using a Singularity image.

Changed

• Changed "Account" label to "Project".
• Changed icon that appears in the "Connect" button.

0.3.0 - 2018-01-31

Added

• Added support for R 3.4.2 alongside 3.3.2 on Owens. #3

Updated

• Updated the date in LICENSE.txt.

Security

• Fixed permissions on generated script with env vars inside.

0.2.1 - 2017-10-20

Changed

• Moved account input field to top of form.

0.2.0 - 2017-10-17

Added

• Wrapper script used to launch rsession in similar environment as original batch job. #8

Changed

• Modified app to take advantage of ERB templates in updated Dashboard.

Fixed

• Removed need for message to user about waiting for server to start. #6

0.1.1 - 2017-10-11

Changed

• Changed the CHANGELOG.md formatting.

Removed

• Removed number of nodes option. #7

0.1.0 - 2017-06-14

Changed

• Refactored for the new Batch Connect app API.

0.0.2 - 2017-05-02

Changed

• Set proot as an external dependency.
• Use system-installed proot.

0.0.1 - 2017-01-20

Added

• Initial release!