Install_packages.Rmd

---
title: "Library_script"
output:
  rmdformats::downcute:
    self_contained: true
    default_style: "light"
    downcute_theme: "chaos"
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

## R Markdown

```{r, include=T}

install.packages("tidyverse")
install.packages("dplyr")
install.packages("ggpubr")
install.packages("DT")
install.packages("imager")
install.packages("kableExtra")
install.packages("circlize")
install.packages("ape")
install.packages("phheatmap")
install.packages("broman")
install.packages("Cairo")
install.packages("devtools")
install.packages("Seurat")
install.packages("ggplot2")
install.packages("Seurat")
install.packages("Matrix")
install.packages("remotes")
remotes::install_github("https://github.com/cran/Rmagic")
if (!require("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("EBImage")
remotes::install_github("jbergenstrahle/STUtility")
install.packages("reticulate")
options(reticulate.conda_binary = "C:/Users/path_to_conda.bat")
BiocManager::install("AUCell")
install.packages("viridis")
BiocManager::install("scater")
BiocManager::install("tradeSeq")
install.packages("Scpubr")
```