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README.markdown

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Downloading required data files

To build a tree, you will first need to download various files from the internet. These are not provided by OneZoom directly as they are (a) very large and (b) regularly updated. The files you will need are:

  • Open Tree of Life files, to be downloaded into the OpenTree directory (see OpenTree/README.markdown
    • labelled_supertree_simplified_ottnames.tre (subsequently converted to draftversionXXX.tre, as detailed in the instructions)
    • ottX.Y/taxonomy.tsv (where X.Y is the OT_TAXONOMY_VERSION)
  • Wikimedia files, to be downloaded into directories within the Wiki directory (see Wiki/README.markdown)
    • wd_JSON/latest-all.json.bz2
    • wp_SQL/enwiki-latest-page.sql.gz
    • wp_pagecounts/pageviews-YYYYMM-user.bz2 (several files for different months). Or download preprocessed files from a release
  • EoL files, to be downloaded into the EOL directory (see EOL/README.markdown)
    • identifiers.csv