From b624d8a8fa36286818e5bdc918ed49aaaee582ff Mon Sep 17 00:00:00 2001 From: Mike Henry <11765982+mikemhenry@users.noreply.github.com> Date: Thu, 21 Dec 2023 13:38:51 -0700 Subject: [PATCH] more fixes to come later but this is good enough --- .github/workflows/ci.yaml | 2 +- environment.yml | 30 ++++++------------------------ 2 files changed, 7 insertions(+), 25 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 59c30ce..d7a75d9 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -58,7 +58,7 @@ jobs: - name: "run tests" run: | - pytest -v --nbval-lax --cov=openfe_benchmarks --cov-report=xml openfe_benchmarks/tests/ + pytest -n auto -v --nbval-lax --cov=openfe_benchmarks --cov-report=xml openfe_benchmarks/tests/ - name: "codecov" if: "github.event != 'schedule'" diff --git a/environment.yml b/environment.yml index af16b51..8bedaa1 100644 --- a/environment.yml +++ b/environment.yml @@ -1,34 +1,16 @@ name: openfe-benchmarks channels: - - jaimergp/label/unsupported-cudatoolkit-shim - conda-forge dependencies: - #- gufe - - pip + - gufe + - openfe + # testing + - nbval - pytest - pytest-xdist - pytest-cov - coverage - - lomap2 - - nbval - - notebook - - ipywidgets - - rdkit - # Stuff that should be in openfe - - click - - mdtraj - - openff-forcefields - - openff-toolkit>=0.11 - - openff-units>=0.1.8 - - openff-models>=0.0.4 - - openmm - - openmmtools - - openmmforcefields - - plugcli - - pymbar - - pydantic - - typing_extensions + # not sure why we don't install from conda-forge + - pip - pip: - - git+https://github.com/OpenFreeEnergy/gufe@main - - git+https://github.com/OpenFreeEnergy/openfe@main - py3dmol