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For posterity; thank you @Tux for supplying your build log. That showed the build process saying it was skipping HDF, no problem.
The actual failure was that t/inlinepdlpp.t was generating code using the installed (pre-2.086) PDL::PP, then C-compiling that against 2.089 pdlcore.h, which unsurprisingly failed. This is likely to be because the test_harness did not pass on its PERL5LIB correctly.
PDL tries to use Alien::HDF4 to find support for PDL::IO::HDF
My box with openSUSE Tumbleweed only has hdf5:
Of course Alien::HDF4 will not find that, so PDL won't be able to support hdf5
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