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This tutorial is based on the BPP manual and the two publications Flouri et al., 2018 and Flouri et al., 2020

Basic Linux Introduction

BPP assumptions

Imap and Sequence input files

Species Tree inference for the Brown Frogs

Control file

Output files

Parameter Estimation under the MSCi for five Saccharomyces species

Baground information

Control file

Output files

Parallelization and Checkpointing