All notable changes to mptp will be documented in this file.
This project adheres to Semantic Versioning.
- Likelihood ratio test for the multi method
- Added implementation for the incomplete gamma function
- Dependency for GNU scientific library
- If we do not manage to generate a random starting delimitation with the wanted number of species (randomly chosen), we use the currently generated delimitation instead.
- Replaced hsearch which was causing problems on APPLE with custom hashtable
- Corrected file name in error messages when failing to open files
- Regular expressions now allow scientific notation when parsing branch lengths
- Improved accuracy of ASV score (takes into account tip species)
- Memory leaks when parsing incorrectly formatted trees
- Updated ASV to consider only coalescent roots of ML delimitation
- Assertion stopping mptp when using random starting delimitations for MCMC
- Floating point exception error when constructing random trees caused from division by zero
- Allocation with malloc caused uninitialized variables when converting unrooted tree to rooted for the MCMC method
- Sample size for the the AIC with a correction for finite sample sizes