DESCRIPTION

Package: PICAFlow
Title: PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis
Version: 1.0.6
Authors@R: 
    person("Paul", "Régnier", , "paul.regnier@aphp.fr", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9713-1132"))
Description: PICAFlow (Pipeline for Integrative and Comprehensive Analysis of Flow/mass cytometry data) is a R-written integrative workflow dedicated to flow/mass cytometry data analysis. It contains all the necessary functions and packages to go from data pre-processing to deep mining and analysis, presented in a user-friendly and easy-to-use fashion.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports:
  parallel,
  doSNOW,
  foreach,
  ggplot2,
  pracma,
  attempt,
  uwot,
  class,
  readxl,
  ROCit,
  cowplot,
  matrixStats,
  methods,
  plotly,
  rlang,
  tcltk,
  shiny,
  utils,
  stats,
  gplots,
  Biobase,
  flowCore,
  flowWorkspace,
  flowStats,
  ggcyto,
  FlowSOM,
  flowGate,
  gh
Remotes:
  bioc::release/Biobase,
  bioc::release/flowCore,
  bioc::release/flowWorkspace,
  bioc::release/flowStats,
  bioc::release/ggcyto,
  git::https://github.com/PaulRegnier/flowGate.git,
  bioc::release/FlowSOM,
  git::https://github.com/sararselitsky/FastPG.git
Suggests: 
    FastPG,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/PaulRegnier/PICAFlow
BugReports: https://github.com/PaulRegnier/PICAFlow/issues