From 115f055a0beb02d498cc01403b5018204b542bc4 Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Mon, 11 Dec 2023 15:19:54 -0500 Subject: [PATCH] Exclude more categories from Gemma --- src/config/gemma.js | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/src/config/gemma.js b/src/config/gemma.js index c8c3e36..e2cfad9 100644 --- a/src/config/gemma.js +++ b/src/config/gemma.js @@ -35,9 +35,13 @@ marked.use({ export { marked }; export let excludedCategories = [ + "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#BioSourceType", // BioSourceType + "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#MaterialType", // MaterialType "http://purl.obolibrary.org/obo/CHEBI_23367", // molecular entity "http://purl.obolibrary.org/obo/GO_0007610", // behavior "http://purl.obolibrary.org/obo/GO_0008150", // biological process + "http://purl.obolibrary.org/obo/OBI_0302893", // storage + "http://purl.obolibrary.org/obo/UO_0000003", // time units "http://www.ebi.ac.uk/efo/EFO_0000352", // clinical history "http://www.ebi.ac.uk/efo/EFO_0000410", // disease staging "http://www.ebi.ac.uk/efo/EFO_0000428", // dose @@ -47,11 +51,10 @@ export let excludedCategories = [ "http://www.ebi.ac.uk/efo/EFO_0000651", // phenotype "http://www.ebi.ac.uk/efo/EFO_0000724", // time point "http://www.ebi.ac.uk/efo/EFO_0001426", // study design - "http://purl.obolibrary.org/obo/OBI_0302893", // storage + "http://www.ebi.ac.uk/efo/EFO_0004425", // initial time points "http://www.ebi.ac.uk/efo/EFO_0004444", // environmental history "http://www.ebi.ac.uk/efo/EFO_0005066", // collection of material - "http://www.ebi.ac.uk/efo/EFO_0005067", // block - "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#MaterialType" // MaterialType + "http://www.ebi.ac.uk/efo/EFO_0005067" // block ]; /**