From 72c01692cf8109ee0901eddf001678a059f525af Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Fri, 4 Aug 2023 10:32:09 -0700 Subject: [PATCH] Add initial time point, maturity and fusion gene to excluded terms --- src/config/gemma.js | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/src/config/gemma.js b/src/config/gemma.js index e039433..b502050 100644 --- a/src/config/gemma.js +++ b/src/config/gemma.js @@ -57,6 +57,7 @@ export let excludedCategories = [ * to not put a term that is too general. */ export let excludedTerms = [ + "http://purl.obolibrary.org/obo/SO_0000287", // fusion gene "http://gemma.msl.ubc.ca/ont/TGEMO_00001", // homozygous negative "http://gemma.msl.ubc.ca/ont/TGEMO_00003", // heterozygous "http://gemma.msl.ubc.ca/ont/TGEMO_00004", // overexpression @@ -66,15 +67,17 @@ export let excludedTerms = [ "http://purl.obolibrary.org/obo/OBI_0302893", // storage "http://purl.obolibrary.org/obo/PATO_0000048", // hardness "http://purl.obolibrary.org/obo/PATO_0000049", // intensity + "http://purl.obolibrary.org/obo/PATO_0000261", // maturity "http://purl.obolibrary.org/obo/PATO_0000937", // disorganized "http://purl.obolibrary.org/obo/PATO_0001178", // resistant to "http://purl.obolibrary.org/obo/PATO_0001397", // cellular potency "http://purl.obolibrary.org/obo/PATO_0002011", // tumorous "http://purl.obolibrary.org/obo/PATO_0002104", // inflammatory "http://purl.obolibrary.org/obo/PATO_0002353", // activation quality - "http://www.ebi.ac.uk/efo/EFO_0001461", // control "http://www.ebi.ac.uk/efo/EFO_0000562", // labelling + "http://www.ebi.ac.uk/efo/EFO_0001461", // control "http://www.ebi.ac.uk/efo/EFO_0001646", // anatomical modifier (contains a lot of modifier terms like left/right, lateral, etc.) + "http://www.ebi.ac.uk/efo/EFO_0004425", // initial time point "http://www.ebi.ac.uk/efo/EFO_0004972", // somatic genotype "http://www.ebi.ac.uk/efo/EFO_0004973", // germline genotype "http://www.ebi.ac.uk/efo/EFO_0005168", // wild type genotype