From f98d48bf67abd939b38d1ec7e3daf12a4da97384 Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Fri, 1 Mar 2024 11:07:59 -0800 Subject: [PATCH] Exclude more categories --- src/config/gemma.js | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/src/config/gemma.js b/src/config/gemma.js index e2cfad9..7ed44c5 100644 --- a/src/config/gemma.js +++ b/src/config/gemma.js @@ -36,25 +36,36 @@ export { marked }; export let excludedCategories = [ "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#BioSourceType", // BioSourceType + "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#LabelCompound", // LabelCompound "http://mged.sourceforge.net/ontologies/MGEDOntology.owl#MaterialType", // MaterialType "http://purl.obolibrary.org/obo/CHEBI_23367", // molecular entity "http://purl.obolibrary.org/obo/GO_0007610", // behavior "http://purl.obolibrary.org/obo/GO_0008150", // biological process + "http://purl.obolibrary.org/obo/OBI_0000272", // protocol + "http://purl.obolibrary.org/obo/OBI_0100051", // specimen "http://purl.obolibrary.org/obo/OBI_0302893", // storage + "http://purl.obolibrary.org/obo/SO_0001024", // haplotypes "http://purl.obolibrary.org/obo/UO_0000003", // time units + "http://www.ebi.ac.uk/efo/EFO_0000246", // Ages (generally useless because it is continuous) + "http://www.ebi.ac.uk/efo/EFO_0000322", // cell line (we use CLO and not EFO) "http://www.ebi.ac.uk/efo/EFO_0000352", // clinical history "http://www.ebi.ac.uk/efo/EFO_0000410", // disease staging "http://www.ebi.ac.uk/efo/EFO_0000428", // dose + "http://www.ebi.ac.uk/efo/EFO_0000470", // environment stress "http://www.ebi.ac.uk/efo/EFO_0000507", // generation "http://www.ebi.ac.uk/efo/EFO_0000523", // growth condition (should be excluded by role) "http://www.ebi.ac.uk/efo/EFO_0000542", // individual + "http://www.ebi.ac.uk/efo/EFO_0000562", // labelling "http://www.ebi.ac.uk/efo/EFO_0000651", // phenotype "http://www.ebi.ac.uk/efo/EFO_0000724", // time point "http://www.ebi.ac.uk/efo/EFO_0001426", // study design + "http://www.ebi.ac.uk/efo/EFO_0001444", // measurement + "http://www.ebi.ac.uk/efo/EFO_0001702", // temperature "http://www.ebi.ac.uk/efo/EFO_0004425", // initial time points "http://www.ebi.ac.uk/efo/EFO_0004444", // environmental history "http://www.ebi.ac.uk/efo/EFO_0005066", // collection of material - "http://www.ebi.ac.uk/efo/EFO_0005067" // block + "http://www.ebi.ac.uk/efo/EFO_0005067", // block + "http://www.ebi.ac.uk/efo/EFO_0005136" // strains ]; /**