From 2e68993802e53026cfc85219b9d9abc915833c1e Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Thu, 9 May 2024 16:57:59 -0700 Subject: [PATCH] Update spec to 2.7.5 --- gemmapy/sdk/__init__.py | 9 +- gemmapy/sdk/api/default_api.py | 734 +++++++++++++++--- gemmapy/sdk/api_client.py | 2 +- gemmapy/sdk/configuration.py | 4 +- gemmapy/sdk/models/__init__.py | 9 +- .../annotation_search_result_value_object.py | 2 +- gemmapy/sdk/models/annotation_value_object.py | 2 +- ...tion_with_usage_statistics_value_object.py | 2 +- gemmapy/sdk/models/api_info_value_object.py | 2 +- .../sdk/models/array_design_value_object.py | 50 +- ...sign_with_usage_statistics_value_object.py | 2 +- .../sdk/models/audit_event_value_object.py | 2 +- .../bibliographic_phenotypes_value_object.py | 2 +- .../bibliographic_reference_value_object.py | 2 +- gemmapy/sdk/models/bio_assay_value_object.py | 2 +- .../sdk/models/bio_material_value_object.py | 2 +- .../sdk/models/bio_sequence_value_object.py | 2 +- ...gory_with_usage_statistics_value_object.py | 2 +- .../sdk/models/characteristic_value_object.py | 2 +- gemmapy/sdk/models/citation_value_object.py | 2 +- gemmapy/sdk/models/composite_sequence_arg.py | 2 +- .../models/composite_sequence_value_object.py | 2 +- .../models/contrast_result_value_object.py | 2 +- gemmapy/sdk/models/database_entry_arg.py | 2 +- .../sdk/models/database_entry_value_object.py | 2 +- gemmapy/sdk/models/dataset.py | 2 +- gemmapy/sdk/models/dataset1.py | 2 +- gemmapy/sdk/models/dataset10.py | 2 +- gemmapy/sdk/models/dataset2.py | 2 +- gemmapy/sdk/models/dataset3.py | 2 +- gemmapy/sdk/models/dataset4.py | 2 +- gemmapy/sdk/models/dataset5.py | 2 +- gemmapy/sdk/models/dataset6.py | 2 +- gemmapy/sdk/models/dataset7.py | 2 +- gemmapy/sdk/models/dataset8.py | 2 +- gemmapy/sdk/models/dataset9.py | 2 +- gemmapy/sdk/models/dataset_arg.py | 2 +- ...diff_ex_result_set_summary_value_object.py | 2 +- ...ession_analysis_result_set_value_object.py | 30 +- ...expression_analysis_result_value_object.py | 2 +- ...ential_expression_analysis_value_object.py | 2 +- ...periment_expression_levels_value_object.py | 2 +- .../experimental_factor_value_object.py | 2 +- .../expression_experiment_set_value_object.py | 2 +- .../expression_experiment_value_object.py | 2 +- ...eriment_with_search_result_value_object.py | 2 +- .../models/external_database_value_object.py | 2 +- .../models/factor_value_basic_value_object.py | 2 +- .../sdk/models/factor_value_value_object.py | 2 +- gemmapy/sdk/models/filter_arg_array_design.py | 2 +- ...lter_arg_expression_analysis_result_set.py | 2 +- .../filter_arg_expression_experiment.py | 2 +- ...e_data_object_array_design_value_object.py | 2 +- ..._object_composite_sequence_value_object.py | 2 +- ...ession_analysis_result_set_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ..._response_data_object_gene_value_object.py | 2 +- gemmapy/sdk/models/geeq_value_object.py | 2 +- gemmapy/sdk/models/gene.py | 2 +- gemmapy/sdk/models/gene1.py | 2 +- gemmapy/sdk/models/gene2.py | 2 +- gemmapy/sdk/models/gene3.py | 2 +- gemmapy/sdk/models/gene4.py | 2 +- .../models/{sort_arg_taxon.py => gene5.py} | 10 +- gemmapy/sdk/models/gene_arg.py | 2 +- .../gene_element_expressions_value_object.py | 2 +- .../models/gene_ontology_term_value_object.py | 2 +- gemmapy/sdk/models/gene_set_value_object.py | 2 +- gemmapy/sdk/models/gene_value_object.py | 2 +- ...tion_with_usage_statistics_value_object.py | 2 +- ...sign_with_usage_statistics_value_object.py | 2 +- .../sdk/models/measurement_value_object.py | 2 +- ...esult_value_object_object_result_object.py | 2 +- .../sdk/models/ontology_term_value_object.py | 2 +- ..._object_composite_sequence_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ..._response_data_object_gene_value_object.py | 240 ++++++ .../models/physical_location_value_object.py | 2 +- gemmapy/sdk/models/platform.py | 2 +- gemmapy/sdk/models/platform1.py | 2 +- gemmapy/sdk/models/platform2.py | 2 +- gemmapy/sdk/models/platform3.py | 2 +- gemmapy/sdk/models/platform4.py | 2 +- gemmapy/sdk/models/platform5.py | 2 +- gemmapy/sdk/models/platform_arg.py | 2 +- gemmapy/sdk/models/probe.py | 2 +- gemmapy/sdk/models/quantitation_type.py | 2 +- gemmapy/sdk/models/quantitation_type_arg.py | 2 +- .../models/quantitation_type_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ...eriment_with_search_result_value_object.py | 2 +- ...gory_with_usage_statistics_value_object.py | 2 +- ...axon_with_usage_statistics_value_object.py | 2 +- gemmapy/sdk/models/query_arg.py | 2 +- ...ponse_data_object_api_info_value_object.py | 2 +- ...ession_analysis_result_set_value_object.py | 2 +- ...t_annotation_search_result_value_object.py | 2 +- ...a_object_list_array_design_value_object.py | 2 +- ...data_object_list_bio_assay_value_object.py | 2 +- ...ential_expression_analysis_value_object.py | 2 +- ...periment_expression_levels_value_object.py | 2 +- ...ct_list_gene_ontology_term_value_object.py | 2 +- ...onse_data_object_list_gene_value_object.py | 2 +- ...ect_list_physical_location_value_object.py | 2 +- ...nse_data_object_list_taxon_value_object.py | 2 +- .../sdk/models/response_data_object_long.py | 2 +- ...data_object_set_annotation_value_object.py | 2 +- ...ject_set_quantitation_type_value_object.py | 2 +- ...nse_data_object_simple_svd_value_object.py | 2 +- gemmapy/sdk/models/response_error_object.py | 2 +- gemmapy/sdk/models/search_result_type.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- .../search_result_value_object_object.py | 2 +- .../search_results_response_data_object.py | 2 +- .../models/search_settings_value_object.py | 2 +- gemmapy/sdk/models/simple_svd_value_object.py | 2 +- gemmapy/sdk/models/sort_arg_array_design.py | 2 +- ...sort_arg_expression_analysis_result_set.py | 2 +- .../models/sort_arg_expression_experiment.py | 2 +- gemmapy/sdk/models/sort_value_object.py | 2 +- gemmapy/sdk/models/statement_value_object.py | 2 +- gemmapy/sdk/models/taxa.py | 84 ++ gemmapy/sdk/models/taxon.py | 2 +- gemmapy/sdk/models/taxon1.py | 2 +- gemmapy/sdk/models/taxon2.py | 2 +- gemmapy/sdk/models/taxon3.py | 2 +- gemmapy/sdk/models/taxon4.py | 2 +- gemmapy/sdk/models/taxon5.py | 2 +- gemmapy/sdk/models/taxon6.py | 2 +- gemmapy/sdk/models/taxon7.py | 84 ++ gemmapy/sdk/models/taxon8.py | 84 ++ gemmapy/sdk/models/taxon9.py | 84 ++ gemmapy/sdk/models/taxon_arg.py | 2 +- gemmapy/sdk/models/taxon_value_object.py | 2 +- ...axon_with_usage_statistics_value_object.py | 2 +- .../sdk/models/vector_element_value_object.py | 2 +- .../sdk/models/well_composed_error_body.py | 2 +- gemmapy/sdk/rest.py | 2 +- sdk-gen/openapi.yaml | 591 +++++++++----- 139 files changed, 1800 insertions(+), 465 deletions(-) rename gemmapy/sdk/models/{sort_arg_taxon.py => gene5.py} (92%) create mode 100644 gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py create mode 100644 gemmapy/sdk/models/taxa.py create mode 100644 gemmapy/sdk/models/taxon7.py create mode 100644 gemmapy/sdk/models/taxon8.py create mode 100644 gemmapy/sdk/models/taxon9.py diff --git a/gemmapy/sdk/__init__.py b/gemmapy/sdk/__init__.py index d0ace79..5d0c13d 100644 --- a/gemmapy/sdk/__init__.py +++ b/gemmapy/sdk/__init__.py @@ -7,7 +7,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -78,6 +78,7 @@ from gemmapy.sdk.models.gene2 import Gene2 from gemmapy.sdk.models.gene3 import Gene3 from gemmapy.sdk.models.gene4 import Gene4 +from gemmapy.sdk.models.gene5 import Gene5 from gemmapy.sdk.models.gene_arg import GeneArg from gemmapy.sdk.models.gene_element_expressions_value_object import GeneElementExpressionsValueObject from gemmapy.sdk.models.gene_ontology_term_value_object import GeneOntologyTermValueObject @@ -90,6 +91,7 @@ from gemmapy.sdk.models.ontology_term_value_object import OntologyTermValueObject from gemmapy.sdk.models.paginated_response_data_object_composite_sequence_value_object import PaginatedResponseDataObjectCompositeSequenceValueObject from gemmapy.sdk.models.paginated_response_data_object_expression_experiment_value_object import PaginatedResponseDataObjectExpressionExperimentValueObject +from gemmapy.sdk.models.paginated_response_data_object_gene_value_object import PaginatedResponseDataObjectGeneValueObject from gemmapy.sdk.models.physical_location_value_object import PhysicalLocationValueObject from gemmapy.sdk.models.platform import Platform from gemmapy.sdk.models.platform1 import Platform1 @@ -132,9 +134,9 @@ from gemmapy.sdk.models.sort_arg_array_design import SortArgArrayDesign from gemmapy.sdk.models.sort_arg_expression_analysis_result_set import SortArgExpressionAnalysisResultSet from gemmapy.sdk.models.sort_arg_expression_experiment import SortArgExpressionExperiment -from gemmapy.sdk.models.sort_arg_taxon import SortArgTaxon from gemmapy.sdk.models.sort_value_object import SortValueObject from gemmapy.sdk.models.statement_value_object import StatementValueObject +from gemmapy.sdk.models.taxa import Taxa from gemmapy.sdk.models.taxon import Taxon from gemmapy.sdk.models.taxon1 import Taxon1 from gemmapy.sdk.models.taxon2 import Taxon2 @@ -142,6 +144,9 @@ from gemmapy.sdk.models.taxon4 import Taxon4 from gemmapy.sdk.models.taxon5 import Taxon5 from gemmapy.sdk.models.taxon6 import Taxon6 +from gemmapy.sdk.models.taxon7 import Taxon7 +from gemmapy.sdk.models.taxon8 import Taxon8 +from gemmapy.sdk.models.taxon9 import Taxon9 from gemmapy.sdk.models.taxon_arg import TaxonArg from gemmapy.sdk.models.taxon_value_object import TaxonValueObject from gemmapy.sdk.models.taxon_with_usage_statistics_value_object import TaxonWithUsageStatisticsValueObject diff --git a/gemmapy/sdk/api/default_api.py b/gemmapy/sdk/api/default_api.py index cc108f5..b9fdcc2 100644 --- a/gemmapy/sdk/api/default_api.py +++ b/gemmapy/sdk/api/default_api.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -823,6 +823,125 @@ def get_dataset_expression_for_genes_with_http_info(self, datasets, genes, **kwa _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) + def get_dataset_expression_for_genes_in_taxa(self, datasets, taxa, genes, **kwargs): # noqa: E501 + """Retrieve the expression data matrix of a set of datasets and genes # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_dataset_expression_for_genes_in_taxa(datasets, taxa, genes, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param list[object] datasets: (required) + :param Taxa taxa: (required) + :param list[object] genes: (required) + :param bool keep_non_specific: + :param str consolidate: + :return: ResponseDataObjectListExperimentExpressionLevelsValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + if kwargs.get('async_req'): + return self.get_dataset_expression_for_genes_in_taxa_with_http_info(datasets, taxa, genes, **kwargs) # noqa: E501 + else: + (data) = self.get_dataset_expression_for_genes_in_taxa_with_http_info(datasets, taxa, genes, **kwargs) # noqa: E501 + return data + + def get_dataset_expression_for_genes_in_taxa_with_http_info(self, datasets, taxa, genes, **kwargs): # noqa: E501 + """Retrieve the expression data matrix of a set of datasets and genes # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_dataset_expression_for_genes_in_taxa_with_http_info(datasets, taxa, genes, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param list[object] datasets: (required) + :param Taxa taxa: (required) + :param list[object] genes: (required) + :param bool keep_non_specific: + :param str consolidate: + :return: ResponseDataObjectListExperimentExpressionLevelsValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['datasets', 'taxa', 'genes', 'keep_non_specific', 'consolidate'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_dataset_expression_for_genes_in_taxa" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'datasets' is set + if ('datasets' not in params or + params['datasets'] is None): + raise ValueError("Missing the required parameter `datasets` when calling `get_dataset_expression_for_genes_in_taxa`") # noqa: E501 + # verify the required parameter 'taxa' is set + if ('taxa' not in params or + params['taxa'] is None): + raise ValueError("Missing the required parameter `taxa` when calling `get_dataset_expression_for_genes_in_taxa`") # noqa: E501 + # verify the required parameter 'genes' is set + if ('genes' not in params or + params['genes'] is None): + raise ValueError("Missing the required parameter `genes` when calling `get_dataset_expression_for_genes_in_taxa`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'datasets' in params: + path_params['datasets'] = params['datasets'] # noqa: E501 + collection_formats['datasets'] = '' # noqa: E501 + if 'taxa' in params: + path_params['taxa'] = params['taxa'] # noqa: E501 + if 'genes' in params: + path_params['genes'] = params['genes'] # noqa: E501 + collection_formats['genes'] = '' # noqa: E501 + + query_params = [] + if 'keep_non_specific' in params: + query_params.append(('keepNonSpecific', params['keep_non_specific'])) # noqa: E501 + if 'consolidate' in params: + query_params.append(('consolidate', params['consolidate'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/datasets/{datasets}/expressions/taxa/{taxa}/genes/{genes}', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type='ResponseDataObjectListExperimentExpressionLevelsValueObject', # noqa: E501 + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + def get_dataset_expression_pca(self, datasets, **kwargs): # noqa: E501 """Retrieve the principal components (PCA) of a set of datasets # noqa: E501 @@ -2299,45 +2418,47 @@ def get_gene_locations_with_http_info(self, gene, **kwargs): # noqa: E501 _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_gene_locations_in_taxon(self, taxon, gene, **kwargs): # noqa: E501 - """Retrieve physical locations for a given gene and taxon # noqa: E501 + def get_gene_probes(self, gene, **kwargs): # noqa: E501 + """Retrieve the probes associated to a genes across all platforms # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_gene_locations_in_taxon(taxon, gene, async_req=True) + >>> thread = api.get_gene_probes(gene, async_req=True) >>> result = thread.get() :param async_req bool - :param Taxon3 taxon: (required) - :param Gene3 gene: (required) - :return: ResponseDataObjectListPhysicalLocationValueObject + :param Gene2 gene: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectCompositeSequenceValueObject If the method is called asynchronously, returns the request thread. """ kwargs['_return_http_data_only'] = True if kwargs.get('async_req'): - return self.get_gene_locations_in_taxon_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return self.get_gene_probes_with_http_info(gene, **kwargs) # noqa: E501 else: - (data) = self.get_gene_locations_in_taxon_with_http_info(taxon, gene, **kwargs) # noqa: E501 + (data) = self.get_gene_probes_with_http_info(gene, **kwargs) # noqa: E501 return data - def get_gene_locations_in_taxon_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 - """Retrieve physical locations for a given gene and taxon # noqa: E501 + def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 + """Retrieve the probes associated to a genes across all platforms # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_gene_locations_in_taxon_with_http_info(taxon, gene, async_req=True) + >>> thread = api.get_gene_probes_with_http_info(gene, async_req=True) >>> result = thread.get() :param async_req bool - :param Taxon3 taxon: (required) - :param Gene3 gene: (required) - :return: ResponseDataObjectListPhysicalLocationValueObject + :param Gene2 gene: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectCompositeSequenceValueObject If the method is called asynchronously, returns the request thread. """ - all_params = ['taxon', 'gene'] # noqa: E501 + all_params = ['gene', 'offset', 'limit'] # noqa: E501 all_params.append('async_req') all_params.append('_return_http_data_only') all_params.append('_preload_content') @@ -2348,28 +2469,26 @@ def get_gene_locations_in_taxon_with_http_info(self, taxon, gene, **kwargs): # if key not in all_params: raise TypeError( "Got an unexpected keyword argument '%s'" - " to method get_gene_locations_in_taxon" % key + " to method get_gene_probes" % key ) params[key] = val del params['kwargs'] - # verify the required parameter 'taxon' is set - if ('taxon' not in params or - params['taxon'] is None): - raise ValueError("Missing the required parameter `taxon` when calling `get_gene_locations_in_taxon`") # noqa: E501 # verify the required parameter 'gene' is set if ('gene' not in params or params['gene'] is None): - raise ValueError("Missing the required parameter `gene` when calling `get_gene_locations_in_taxon`") # noqa: E501 + raise ValueError("Missing the required parameter `gene` when calling `get_gene_probes`") # noqa: E501 collection_formats = {} path_params = {} - if 'taxon' in params: - path_params['taxon'] = params['taxon'] # noqa: E501 if 'gene' in params: path_params['gene'] = params['gene'] # noqa: E501 query_params = [] + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 header_params = {} @@ -2385,14 +2504,14 @@ def get_gene_locations_in_taxon_with_http_info(self, taxon, gene, **kwargs): # auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 return self.api_client.call_api( - '/taxa/{taxon}/genes/{gene}/locations', 'GET', + '/genes/{gene}/probes', 'GET', path_params, query_params, header_params, body=body_params, post_params=form_params, files=local_var_files, - response_type='ResponseDataObjectListPhysicalLocationValueObject', # noqa: E501 + response_type='PaginatedResponseDataObjectCompositeSequenceValueObject', # noqa: E501 auth_settings=auth_settings, async_req=params.get('async_req'), _return_http_data_only=params.get('_return_http_data_only'), @@ -2400,47 +2519,43 @@ def get_gene_locations_in_taxon_with_http_info(self, taxon, gene, **kwargs): # _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_gene_probes(self, gene, **kwargs): # noqa: E501 - """Retrieve the probes associated to a genes across all platforms # noqa: E501 + def get_genes(self, genes, **kwargs): # noqa: E501 + """Retrieve genes matching gene identifiers # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_gene_probes(gene, async_req=True) + >>> thread = api.get_genes(genes, async_req=True) >>> result = thread.get() :param async_req bool - :param Gene2 gene: (required) - :param int offset: - :param int limit: - :return: FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject + :param list[object] genes: (required) + :return: ResponseDataObjectListGeneValueObject If the method is called asynchronously, returns the request thread. """ kwargs['_return_http_data_only'] = True if kwargs.get('async_req'): - return self.get_gene_probes_with_http_info(gene, **kwargs) # noqa: E501 + return self.get_genes_with_http_info(genes, **kwargs) # noqa: E501 else: - (data) = self.get_gene_probes_with_http_info(gene, **kwargs) # noqa: E501 + (data) = self.get_genes_with_http_info(genes, **kwargs) # noqa: E501 return data - def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 - """Retrieve the probes associated to a genes across all platforms # noqa: E501 + def get_genes_with_http_info(self, genes, **kwargs): # noqa: E501 + """Retrieve genes matching gene identifiers # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_gene_probes_with_http_info(gene, async_req=True) + >>> thread = api.get_genes_with_http_info(genes, async_req=True) >>> result = thread.get() :param async_req bool - :param Gene2 gene: (required) - :param int offset: - :param int limit: - :return: FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject + :param list[object] genes: (required) + :return: ResponseDataObjectListGeneValueObject If the method is called asynchronously, returns the request thread. """ - all_params = ['gene', 'offset', 'limit'] # noqa: E501 + all_params = ['genes'] # noqa: E501 all_params.append('async_req') all_params.append('_return_http_data_only') all_params.append('_preload_content') @@ -2451,26 +2566,23 @@ def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 if key not in all_params: raise TypeError( "Got an unexpected keyword argument '%s'" - " to method get_gene_probes" % key + " to method get_genes" % key ) params[key] = val del params['kwargs'] - # verify the required parameter 'gene' is set - if ('gene' not in params or - params['gene'] is None): - raise ValueError("Missing the required parameter `gene` when calling `get_gene_probes`") # noqa: E501 + # verify the required parameter 'genes' is set + if ('genes' not in params or + params['genes'] is None): + raise ValueError("Missing the required parameter `genes` when calling `get_genes`") # noqa: E501 collection_formats = {} path_params = {} - if 'gene' in params: - path_params['gene'] = params['gene'] # noqa: E501 + if 'genes' in params: + path_params['genes'] = params['genes'] # noqa: E501 + collection_formats['genes'] = '' # noqa: E501 query_params = [] - if 'offset' in params: - query_params.append(('offset', params['offset'])) # noqa: E501 - if 'limit' in params: - query_params.append(('limit', params['limit'])) # noqa: E501 header_params = {} @@ -2486,14 +2598,14 @@ def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 return self.api_client.call_api( - '/genes/{gene}/probes', 'GET', + '/genes/{genes}', 'GET', path_params, query_params, header_params, body=body_params, post_params=form_params, files=local_var_files, - response_type='FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject', # noqa: E501 + response_type='ResponseDataObjectListGeneValueObject', # noqa: E501 auth_settings=auth_settings, async_req=params.get('async_req'), _return_http_data_only=params.get('_return_http_data_only'), @@ -2501,43 +2613,45 @@ def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_genes(self, genes, **kwargs): # noqa: E501 - """Retrieve genes matching gene identifiers # noqa: E501 + def get_genes1(self, **kwargs): # noqa: E501 + """Retrieve all genes # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_genes(genes, async_req=True) + >>> thread = api.get_genes1(async_req=True) >>> result = thread.get() :param async_req bool - :param list[object] genes: (required) - :return: ResponseDataObjectListGeneValueObject + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectGeneValueObject If the method is called asynchronously, returns the request thread. """ kwargs['_return_http_data_only'] = True if kwargs.get('async_req'): - return self.get_genes_with_http_info(genes, **kwargs) # noqa: E501 + return self.get_genes1_with_http_info(**kwargs) # noqa: E501 else: - (data) = self.get_genes_with_http_info(genes, **kwargs) # noqa: E501 + (data) = self.get_genes1_with_http_info(**kwargs) # noqa: E501 return data - def get_genes_with_http_info(self, genes, **kwargs): # noqa: E501 - """Retrieve genes matching gene identifiers # noqa: E501 + def get_genes1_with_http_info(self, **kwargs): # noqa: E501 + """Retrieve all genes # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_genes_with_http_info(genes, async_req=True) + >>> thread = api.get_genes1_with_http_info(async_req=True) >>> result = thread.get() :param async_req bool - :param list[object] genes: (required) - :return: ResponseDataObjectListGeneValueObject + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectGeneValueObject If the method is called asynchronously, returns the request thread. """ - all_params = ['genes'] # noqa: E501 + all_params = ['offset', 'limit'] # noqa: E501 all_params.append('async_req') all_params.append('_return_http_data_only') all_params.append('_preload_content') @@ -2548,23 +2662,20 @@ def get_genes_with_http_info(self, genes, **kwargs): # noqa: E501 if key not in all_params: raise TypeError( "Got an unexpected keyword argument '%s'" - " to method get_genes" % key + " to method get_genes1" % key ) params[key] = val del params['kwargs'] - # verify the required parameter 'genes' is set - if ('genes' not in params or - params['genes'] is None): - raise ValueError("Missing the required parameter `genes` when calling `get_genes`") # noqa: E501 collection_formats = {} path_params = {} - if 'genes' in params: - path_params['genes'] = params['genes'] # noqa: E501 - collection_formats['genes'] = '' # noqa: E501 query_params = [] + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 header_params = {} @@ -2580,14 +2691,14 @@ def get_genes_with_http_info(self, genes, **kwargs): # noqa: E501 auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 return self.api_client.call_api( - '/genes/{genes}', 'GET', + '/genes', 'GET', path_params, query_params, header_params, body=body_params, post_params=form_params, files=local_var_files, - response_type='ResponseDataObjectListGeneValueObject', # noqa: E501 + response_type='PaginatedResponseDataObjectGeneValueObject', # noqa: E501 auth_settings=auth_settings, async_req=params.get('async_req'), _return_http_data_only=params.get('_return_http_data_only'), @@ -4076,11 +4187,11 @@ def get_taxon_datasets(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon4 taxon: (required) + :param Taxon3 taxon: (required) :param FilterArgExpressionExperiment filter: :param int offset: :param int limit: - :param SortArgTaxon sort: + :param SortArgExpressionExperiment sort: :return: FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject If the method is called asynchronously, returns the request thread. @@ -4101,11 +4212,11 @@ def get_taxon_datasets_with_http_info(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon4 taxon: (required) + :param Taxon3 taxon: (required) :param FilterArgExpressionExperiment filter: :param int offset: :param int limit: - :param SortArgTaxon sort: + :param SortArgExpressionExperiment sort: :return: FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject If the method is called asynchronously, returns the request thread. @@ -4176,40 +4287,40 @@ def get_taxon_datasets_with_http_info(self, taxon, **kwargs): # noqa: E501 _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_taxon_genes(self, taxon, gene, **kwargs): # noqa: E501 - """Retrieve all genes in a given taxon # noqa: E501 + def get_taxon_gene_go_terms(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the GO terms associated to a gene in a given taxon # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_taxon_genes(taxon, gene, async_req=True) + >>> thread = api.get_taxon_gene_go_terms(taxon, gene, async_req=True) >>> result = thread.get() :param async_req bool - :param Taxon5 taxon: (required) - :param Gene4 gene: (required) - :return: ResponseDataObjectListGeneValueObject + :param Taxon4 taxon: (required) + :param Gene3 gene: (required) + :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. """ kwargs['_return_http_data_only'] = True if kwargs.get('async_req'): - return self.get_taxon_genes_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return self.get_taxon_gene_go_terms_with_http_info(taxon, gene, **kwargs) # noqa: E501 else: - (data) = self.get_taxon_genes_with_http_info(taxon, gene, **kwargs) # noqa: E501 + (data) = self.get_taxon_gene_go_terms_with_http_info(taxon, gene, **kwargs) # noqa: E501 return data - def get_taxon_genes_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 - """Retrieve all genes in a given taxon # noqa: E501 + def get_taxon_gene_go_terms_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the GO terms associated to a gene in a given taxon # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_taxon_genes_with_http_info(taxon, gene, async_req=True) + >>> thread = api.get_taxon_gene_go_terms_with_http_info(taxon, gene, async_req=True) >>> result = thread.get() :param async_req bool - :param Taxon5 taxon: (required) - :param Gene4 gene: (required) - :return: ResponseDataObjectListGeneValueObject + :param Taxon4 taxon: (required) + :param Gene3 gene: (required) + :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. """ @@ -4225,18 +4336,18 @@ def get_taxon_genes_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 if key not in all_params: raise TypeError( "Got an unexpected keyword argument '%s'" - " to method get_taxon_genes" % key + " to method get_taxon_gene_go_terms" % key ) params[key] = val del params['kwargs'] # verify the required parameter 'taxon' is set if ('taxon' not in params or params['taxon'] is None): - raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_genes`") # noqa: E501 + raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_gene_go_terms`") # noqa: E501 # verify the required parameter 'gene' is set if ('gene' not in params or params['gene'] is None): - raise ValueError("Missing the required parameter `gene` when calling `get_taxon_genes`") # noqa: E501 + raise ValueError("Missing the required parameter `gene` when calling `get_taxon_gene_go_terms`") # noqa: E501 collection_formats = {} @@ -4262,14 +4373,14 @@ def get_taxon_genes_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 return self.api_client.call_api( - '/taxa/{taxon}/genes/{gene}', 'GET', + '/taxa/{taxon}/genes/{gene}/goTerms', 'GET', path_params, query_params, header_params, body=body_params, post_params=form_params, files=local_var_files, - response_type='ResponseDataObjectListGeneValueObject', # noqa: E501 + response_type='ResponseDataObjectListGeneOntologyTermValueObject', # noqa: E501 auth_settings=auth_settings, async_req=params.get('async_req'), _return_http_data_only=params.get('_return_http_data_only'), @@ -4277,7 +4388,420 @@ def get_taxon_genes_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_taxon_genes_overlapping_chromosome(self, taxon, chromosome, start, size, **kwargs): # noqa: E501 + def get_taxon_gene_locations(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve physical locations for a given gene and taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_gene_locations(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon5 taxon: (required) + :param Gene4 gene: (required) + :return: ResponseDataObjectListPhysicalLocationValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + if kwargs.get('async_req'): + return self.get_taxon_gene_locations_with_http_info(taxon, gene, **kwargs) # noqa: E501 + else: + (data) = self.get_taxon_gene_locations_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return data + + def get_taxon_gene_locations_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve physical locations for a given gene and taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_gene_locations_with_http_info(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon5 taxon: (required) + :param Gene4 gene: (required) + :return: ResponseDataObjectListPhysicalLocationValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['taxon', 'gene'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_taxon_gene_locations" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'taxon' is set + if ('taxon' not in params or + params['taxon'] is None): + raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_gene_locations`") # noqa: E501 + # verify the required parameter 'gene' is set + if ('gene' not in params or + params['gene'] is None): + raise ValueError("Missing the required parameter `gene` when calling `get_taxon_gene_locations`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'taxon' in params: + path_params['taxon'] = params['taxon'] # noqa: E501 + if 'gene' in params: + path_params['gene'] = params['gene'] # noqa: E501 + + query_params = [] + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/taxa/{taxon}/genes/{gene}/locations', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type='ResponseDataObjectListPhysicalLocationValueObject', # noqa: E501 + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_taxon_gene_probes(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the probes associated to a genes across all platforms in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_gene_probes(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon6 taxon: (required) + :param Gene5 gene: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectCompositeSequenceValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + if kwargs.get('async_req'): + return self.get_taxon_gene_probes_with_http_info(taxon, gene, **kwargs) # noqa: E501 + else: + (data) = self.get_taxon_gene_probes_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return data + + def get_taxon_gene_probes_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the probes associated to a genes across all platforms in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_gene_probes_with_http_info(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon6 taxon: (required) + :param Gene5 gene: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectCompositeSequenceValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['taxon', 'gene', 'offset', 'limit'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_taxon_gene_probes" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'taxon' is set + if ('taxon' not in params or + params['taxon'] is None): + raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_gene_probes`") # noqa: E501 + # verify the required parameter 'gene' is set + if ('gene' not in params or + params['gene'] is None): + raise ValueError("Missing the required parameter `gene` when calling `get_taxon_gene_probes`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'taxon' in params: + path_params['taxon'] = params['taxon'] # noqa: E501 + if 'gene' in params: + path_params['gene'] = params['gene'] # noqa: E501 + + query_params = [] + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/taxa/{taxon}/genes/{gene}/probes', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type='PaginatedResponseDataObjectCompositeSequenceValueObject', # noqa: E501 + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_taxon_genes(self, taxon, **kwargs): # noqa: E501 + """Retrieve all genes in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_genes(taxon, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon7 taxon: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + if kwargs.get('async_req'): + return self.get_taxon_genes_with_http_info(taxon, **kwargs) # noqa: E501 + else: + (data) = self.get_taxon_genes_with_http_info(taxon, **kwargs) # noqa: E501 + return data + + def get_taxon_genes_with_http_info(self, taxon, **kwargs): # noqa: E501 + """Retrieve all genes in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_genes_with_http_info(taxon, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon7 taxon: (required) + :param int offset: + :param int limit: + :return: PaginatedResponseDataObjectGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['taxon', 'offset', 'limit'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_taxon_genes" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'taxon' is set + if ('taxon' not in params or + params['taxon'] is None): + raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_genes`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'taxon' in params: + path_params['taxon'] = params['taxon'] # noqa: E501 + + query_params = [] + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/taxa/{taxon}/genes', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type='PaginatedResponseDataObjectGeneValueObject', # noqa: E501 + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_taxon_genes_by_ids(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve genes matching gene identifiers in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_genes_by_ids(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon8 taxon: (required) + :param list[object] gene: (required) + :return: ResponseDataObjectListGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + if kwargs.get('async_req'): + return self.get_taxon_genes_by_ids_with_http_info(taxon, gene, **kwargs) # noqa: E501 + else: + (data) = self.get_taxon_genes_by_ids_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return data + + def get_taxon_genes_by_ids_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve genes matching gene identifiers in a given taxon # noqa: E501 + + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_taxon_genes_by_ids_with_http_info(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon8 taxon: (required) + :param list[object] gene: (required) + :return: ResponseDataObjectListGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['taxon', 'gene'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_taxon_genes_by_ids" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'taxon' is set + if ('taxon' not in params or + params['taxon'] is None): + raise ValueError("Missing the required parameter `taxon` when calling `get_taxon_genes_by_ids`") # noqa: E501 + # verify the required parameter 'gene' is set + if ('gene' not in params or + params['gene'] is None): + raise ValueError("Missing the required parameter `gene` when calling `get_taxon_genes_by_ids`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'taxon' in params: + path_params['taxon'] = params['taxon'] # noqa: E501 + if 'gene' in params: + path_params['gene'] = params['gene'] # noqa: E501 + collection_formats['gene'] = '' # noqa: E501 + + query_params = [] + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/taxa/{taxon}/genes/{gene}', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type='ResponseDataObjectListGeneValueObject', # noqa: E501 + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_taxon_genes_overlapping_chromosome(self, taxon, chromosome, start, size, **kwargs): # noqa: E501 """Retrieve genes overlapping a given region in a taxon # noqa: E501 This method makes a synchronous HTTP request by default. To make an @@ -4286,7 +4810,7 @@ def get_taxon_genes_overlapping_chromosome(self, taxon, chromosome, start, size, >>> result = thread.get() :param async_req bool - :param Taxon6 taxon: (required) + :param Taxon9 taxon: (required) :param str chromosome: (required) :param int start: (required) :param int size: (required) @@ -4311,7 +4835,7 @@ def get_taxon_genes_overlapping_chromosome_with_http_info(self, taxon, chromosom >>> result = thread.get() :param async_req bool - :param Taxon6 taxon: (required) + :param Taxon9 taxon: (required) :param str chromosome: (required) :param int start: (required) :param int size: (required) diff --git a/gemmapy/sdk/api_client.py b/gemmapy/sdk/api_client.py index 099e57b..40add88 100644 --- a/gemmapy/sdk/api_client.py +++ b/gemmapy/sdk/api_client.py @@ -4,7 +4,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/configuration.py b/gemmapy/sdk/configuration.py index 28c7066..fb0d1bd 100644 --- a/gemmapy/sdk/configuration.py +++ b/gemmapy/sdk/configuration.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -256,6 +256,6 @@ def to_debug_report(self): return "Python SDK Debug Report:\n"\ "OS: {env}\n"\ "Python Version: {pyversion}\n"\ - "Version of the API: 2.7.4\n"\ + "Version of the API: 2.7.5\n"\ "SDK Package Version: 1.0.0".\ format(env=sys.platform, pyversion=sys.version) diff --git a/gemmapy/sdk/models/__init__.py b/gemmapy/sdk/models/__init__.py index 8533c52..77eb752 100644 --- a/gemmapy/sdk/models/__init__.py +++ b/gemmapy/sdk/models/__init__.py @@ -6,7 +6,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -72,6 +72,7 @@ from gemmapy.sdk.models.gene2 import Gene2 from gemmapy.sdk.models.gene3 import Gene3 from gemmapy.sdk.models.gene4 import Gene4 +from gemmapy.sdk.models.gene5 import Gene5 from gemmapy.sdk.models.gene_arg import GeneArg from gemmapy.sdk.models.gene_element_expressions_value_object import GeneElementExpressionsValueObject from gemmapy.sdk.models.gene_ontology_term_value_object import GeneOntologyTermValueObject @@ -84,6 +85,7 @@ from gemmapy.sdk.models.ontology_term_value_object import OntologyTermValueObject from gemmapy.sdk.models.paginated_response_data_object_composite_sequence_value_object import PaginatedResponseDataObjectCompositeSequenceValueObject from gemmapy.sdk.models.paginated_response_data_object_expression_experiment_value_object import PaginatedResponseDataObjectExpressionExperimentValueObject +from gemmapy.sdk.models.paginated_response_data_object_gene_value_object import PaginatedResponseDataObjectGeneValueObject from gemmapy.sdk.models.physical_location_value_object import PhysicalLocationValueObject from gemmapy.sdk.models.platform import Platform from gemmapy.sdk.models.platform1 import Platform1 @@ -126,9 +128,9 @@ from gemmapy.sdk.models.sort_arg_array_design import SortArgArrayDesign from gemmapy.sdk.models.sort_arg_expression_analysis_result_set import SortArgExpressionAnalysisResultSet from gemmapy.sdk.models.sort_arg_expression_experiment import SortArgExpressionExperiment -from gemmapy.sdk.models.sort_arg_taxon import SortArgTaxon from gemmapy.sdk.models.sort_value_object import SortValueObject from gemmapy.sdk.models.statement_value_object import StatementValueObject +from gemmapy.sdk.models.taxa import Taxa from gemmapy.sdk.models.taxon import Taxon from gemmapy.sdk.models.taxon1 import Taxon1 from gemmapy.sdk.models.taxon2 import Taxon2 @@ -136,6 +138,9 @@ from gemmapy.sdk.models.taxon4 import Taxon4 from gemmapy.sdk.models.taxon5 import Taxon5 from gemmapy.sdk.models.taxon6 import Taxon6 +from gemmapy.sdk.models.taxon7 import Taxon7 +from gemmapy.sdk.models.taxon8 import Taxon8 +from gemmapy.sdk.models.taxon9 import Taxon9 from gemmapy.sdk.models.taxon_arg import TaxonArg from gemmapy.sdk.models.taxon_value_object import TaxonValueObject from gemmapy.sdk.models.taxon_with_usage_statistics_value_object import TaxonWithUsageStatisticsValueObject diff --git a/gemmapy/sdk/models/annotation_search_result_value_object.py b/gemmapy/sdk/models/annotation_search_result_value_object.py index 5921d62..4ffaf02 100644 --- a/gemmapy/sdk/models/annotation_search_result_value_object.py +++ b/gemmapy/sdk/models/annotation_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/annotation_value_object.py b/gemmapy/sdk/models/annotation_value_object.py index b603077..760eca1 100644 --- a/gemmapy/sdk/models/annotation_value_object.py +++ b/gemmapy/sdk/models/annotation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py b/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py index 7199c3f..18032a2 100644 --- a/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/api_info_value_object.py b/gemmapy/sdk/models/api_info_value_object.py index d011ce0..2cb0147 100644 --- a/gemmapy/sdk/models/api_info_value_object.py +++ b/gemmapy/sdk/models/api_info_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/array_design_value_object.py b/gemmapy/sdk/models/array_design_value_object.py index fb2bd28..5189d3d 100644 --- a/gemmapy/sdk/models/array_design_value_object.py +++ b/gemmapy/sdk/models/array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -47,8 +47,8 @@ class ArrayDesignValueObject(object): 'release_version': 'str', 'release_url': 'str', 'external_references': 'list[DatabaseEntryValueObject]', - 'taxon_id': 'int', 'number_of_expression_experiments': 'int', + 'taxon_id': 'int', 'trouble_details': 'str', 'number_of_switched_expression_experiments': 'int', 'taxon': 'TaxonValueObject' @@ -74,14 +74,14 @@ class ArrayDesignValueObject(object): 'release_version': 'releaseVersion', 'release_url': 'releaseUrl', 'external_references': 'externalReferences', - 'taxon_id': 'taxonID', 'number_of_expression_experiments': 'numberOfExpressionExperiments', + 'taxon_id': 'taxonID', 'trouble_details': 'troubleDetails', 'number_of_switched_expression_experiments': 'numberOfSwitchedExpressionExperiments', 'taxon': 'taxon' } - def __init__(self, id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, color=None, description=None, expression_experiment_count=None, is_merged=None, is_mergee=None, name=None, short_name=None, technology_type=None, release_version=None, release_url=None, external_references=None, taxon_id=None, number_of_expression_experiments=None, trouble_details=None, number_of_switched_expression_experiments=None, taxon=None): # noqa: E501 + def __init__(self, id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, color=None, description=None, expression_experiment_count=None, is_merged=None, is_mergee=None, name=None, short_name=None, technology_type=None, release_version=None, release_url=None, external_references=None, number_of_expression_experiments=None, taxon_id=None, trouble_details=None, number_of_switched_expression_experiments=None, taxon=None): # noqa: E501 """ArrayDesignValueObject - a model defined in Swagger""" # noqa: E501 self._id = None self._last_updated = None @@ -102,8 +102,8 @@ def __init__(self, id=None, last_updated=None, troubled=None, last_troubled_even self._release_version = None self._release_url = None self._external_references = None - self._taxon_id = None self._number_of_expression_experiments = None + self._taxon_id = None self._trouble_details = None self._number_of_switched_expression_experiments = None self._taxon = None @@ -146,10 +146,10 @@ def __init__(self, id=None, last_updated=None, troubled=None, last_troubled_even self.release_url = release_url if external_references is not None: self.external_references = external_references - if taxon_id is not None: - self.taxon_id = taxon_id if number_of_expression_experiments is not None: self.number_of_expression_experiments = number_of_expression_experiments + if taxon_id is not None: + self.taxon_id = taxon_id if trouble_details is not None: self.trouble_details = trouble_details if number_of_switched_expression_experiments is not None: @@ -569,46 +569,46 @@ def external_references(self, external_references): self._external_references = external_references @property - def taxon_id(self): - """Gets the taxon_id of this ArrayDesignValueObject. # noqa: E501 + def number_of_expression_experiments(self): + """Gets the number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 - :return: The taxon_id of this ArrayDesignValueObject. # noqa: E501 + :return: The number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 :rtype: int """ - return self._taxon_id + return self._number_of_expression_experiments - @taxon_id.setter - def taxon_id(self, taxon_id): - """Sets the taxon_id of this ArrayDesignValueObject. + @number_of_expression_experiments.setter + def number_of_expression_experiments(self, number_of_expression_experiments): + """Sets the number_of_expression_experiments of this ArrayDesignValueObject. - :param taxon_id: The taxon_id of this ArrayDesignValueObject. # noqa: E501 + :param number_of_expression_experiments: The number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 :type: int """ - self._taxon_id = taxon_id + self._number_of_expression_experiments = number_of_expression_experiments @property - def number_of_expression_experiments(self): - """Gets the number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 + def taxon_id(self): + """Gets the taxon_id of this ArrayDesignValueObject. # noqa: E501 - :return: The number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 + :return: The taxon_id of this ArrayDesignValueObject. # noqa: E501 :rtype: int """ - return self._number_of_expression_experiments + return self._taxon_id - @number_of_expression_experiments.setter - def number_of_expression_experiments(self, number_of_expression_experiments): - """Sets the number_of_expression_experiments of this ArrayDesignValueObject. + @taxon_id.setter + def taxon_id(self, taxon_id): + """Sets the taxon_id of this ArrayDesignValueObject. - :param number_of_expression_experiments: The number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501 + :param taxon_id: The taxon_id of this ArrayDesignValueObject. # noqa: E501 :type: int """ - self._number_of_expression_experiments = number_of_expression_experiments + self._taxon_id = taxon_id @property def trouble_details(self): diff --git a/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py b/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py index ae57bc0..df033c2 100644 --- a/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/audit_event_value_object.py b/gemmapy/sdk/models/audit_event_value_object.py index f9f1871..e19dd6c 100644 --- a/gemmapy/sdk/models/audit_event_value_object.py +++ b/gemmapy/sdk/models/audit_event_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py b/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py index a57250c..c55e688 100644 --- a/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py +++ b/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bibliographic_reference_value_object.py b/gemmapy/sdk/models/bibliographic_reference_value_object.py index ff87ca2..b50a99d 100644 --- a/gemmapy/sdk/models/bibliographic_reference_value_object.py +++ b/gemmapy/sdk/models/bibliographic_reference_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_assay_value_object.py b/gemmapy/sdk/models/bio_assay_value_object.py index ed380ce..f9482d1 100644 --- a/gemmapy/sdk/models/bio_assay_value_object.py +++ b/gemmapy/sdk/models/bio_assay_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_material_value_object.py b/gemmapy/sdk/models/bio_material_value_object.py index 91bb030..a403df2 100644 --- a/gemmapy/sdk/models/bio_material_value_object.py +++ b/gemmapy/sdk/models/bio_material_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_sequence_value_object.py b/gemmapy/sdk/models/bio_sequence_value_object.py index abad9d5..037db55 100644 --- a/gemmapy/sdk/models/bio_sequence_value_object.py +++ b/gemmapy/sdk/models/bio_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/category_with_usage_statistics_value_object.py b/gemmapy/sdk/models/category_with_usage_statistics_value_object.py index dcbde81..b715a9b 100644 --- a/gemmapy/sdk/models/category_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/category_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/characteristic_value_object.py b/gemmapy/sdk/models/characteristic_value_object.py index c54d79e..4a84641 100644 --- a/gemmapy/sdk/models/characteristic_value_object.py +++ b/gemmapy/sdk/models/characteristic_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/citation_value_object.py b/gemmapy/sdk/models/citation_value_object.py index 2bd8755..0b7bae6 100644 --- a/gemmapy/sdk/models/citation_value_object.py +++ b/gemmapy/sdk/models/citation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/composite_sequence_arg.py b/gemmapy/sdk/models/composite_sequence_arg.py index 932aa13..8afeb52 100644 --- a/gemmapy/sdk/models/composite_sequence_arg.py +++ b/gemmapy/sdk/models/composite_sequence_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/composite_sequence_value_object.py b/gemmapy/sdk/models/composite_sequence_value_object.py index ab17828..a801b83 100644 --- a/gemmapy/sdk/models/composite_sequence_value_object.py +++ b/gemmapy/sdk/models/composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/contrast_result_value_object.py b/gemmapy/sdk/models/contrast_result_value_object.py index 02aaf78..d018938 100644 --- a/gemmapy/sdk/models/contrast_result_value_object.py +++ b/gemmapy/sdk/models/contrast_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/database_entry_arg.py b/gemmapy/sdk/models/database_entry_arg.py index ef01e00..c42cdde 100644 --- a/gemmapy/sdk/models/database_entry_arg.py +++ b/gemmapy/sdk/models/database_entry_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/database_entry_value_object.py b/gemmapy/sdk/models/database_entry_value_object.py index 3d6b680..a6aedf9 100644 --- a/gemmapy/sdk/models/database_entry_value_object.py +++ b/gemmapy/sdk/models/database_entry_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset.py b/gemmapy/sdk/models/dataset.py index 4576040..d9faff7 100644 --- a/gemmapy/sdk/models/dataset.py +++ b/gemmapy/sdk/models/dataset.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset1.py b/gemmapy/sdk/models/dataset1.py index e15eec2..163e0eb 100644 --- a/gemmapy/sdk/models/dataset1.py +++ b/gemmapy/sdk/models/dataset1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset10.py b/gemmapy/sdk/models/dataset10.py index 2c0fd14..541cd5e 100644 --- a/gemmapy/sdk/models/dataset10.py +++ b/gemmapy/sdk/models/dataset10.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset2.py b/gemmapy/sdk/models/dataset2.py index 83a3ffb..832fa21 100644 --- a/gemmapy/sdk/models/dataset2.py +++ b/gemmapy/sdk/models/dataset2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset3.py b/gemmapy/sdk/models/dataset3.py index 7cb84c1..7237de8 100644 --- a/gemmapy/sdk/models/dataset3.py +++ b/gemmapy/sdk/models/dataset3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset4.py b/gemmapy/sdk/models/dataset4.py index 7eafeed..e948fe1 100644 --- a/gemmapy/sdk/models/dataset4.py +++ b/gemmapy/sdk/models/dataset4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset5.py b/gemmapy/sdk/models/dataset5.py index 8e0e423..08565c0 100644 --- a/gemmapy/sdk/models/dataset5.py +++ b/gemmapy/sdk/models/dataset5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset6.py b/gemmapy/sdk/models/dataset6.py index 3e50fdc..c620427 100644 --- a/gemmapy/sdk/models/dataset6.py +++ b/gemmapy/sdk/models/dataset6.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset7.py b/gemmapy/sdk/models/dataset7.py index da62f65..1a8f6d0 100644 --- a/gemmapy/sdk/models/dataset7.py +++ b/gemmapy/sdk/models/dataset7.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset8.py b/gemmapy/sdk/models/dataset8.py index 6bbb717..6b24f96 100644 --- a/gemmapy/sdk/models/dataset8.py +++ b/gemmapy/sdk/models/dataset8.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset9.py b/gemmapy/sdk/models/dataset9.py index 43838a5..77b4265 100644 --- a/gemmapy/sdk/models/dataset9.py +++ b/gemmapy/sdk/models/dataset9.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset_arg.py b/gemmapy/sdk/models/dataset_arg.py index b2f496e..54a2373 100644 --- a/gemmapy/sdk/models/dataset_arg.py +++ b/gemmapy/sdk/models/dataset_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py b/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py index 0ed4f9b..581545b 100644 --- a/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py +++ b/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py index d596198..9806e29 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -32,6 +32,7 @@ class DifferentialExpressionAnalysisResultSetValueObject(object): 'analysis': 'DifferentialExpressionAnalysisValueObject', 'experimental_factors': 'list[ExperimentalFactorValueObject]', 'baseline_group': 'FactorValueBasicValueObject', + 'second_baseline_group': 'FactorValueBasicValueObject', 'results': 'list[DifferentialExpressionAnalysisResultValueObject]' } @@ -40,15 +41,17 @@ class DifferentialExpressionAnalysisResultSetValueObject(object): 'analysis': 'analysis', 'experimental_factors': 'experimentalFactors', 'baseline_group': 'baselineGroup', + 'second_baseline_group': 'secondBaselineGroup', 'results': 'results' } - def __init__(self, id=None, analysis=None, experimental_factors=None, baseline_group=None, results=None): # noqa: E501 + def __init__(self, id=None, analysis=None, experimental_factors=None, baseline_group=None, second_baseline_group=None, results=None): # noqa: E501 """DifferentialExpressionAnalysisResultSetValueObject - a model defined in Swagger""" # noqa: E501 self._id = None self._analysis = None self._experimental_factors = None self._baseline_group = None + self._second_baseline_group = None self._results = None self.discriminator = None if id is not None: @@ -59,6 +62,8 @@ def __init__(self, id=None, analysis=None, experimental_factors=None, baseline_g self.experimental_factors = experimental_factors if baseline_group is not None: self.baseline_group = baseline_group + if second_baseline_group is not None: + self.second_baseline_group = second_baseline_group if results is not None: self.results = results @@ -146,6 +151,27 @@ def baseline_group(self, baseline_group): self._baseline_group = baseline_group + @property + def second_baseline_group(self): + """Gets the second_baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501 + + + :return: The second_baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501 + :rtype: FactorValueBasicValueObject + """ + return self._second_baseline_group + + @second_baseline_group.setter + def second_baseline_group(self, second_baseline_group): + """Sets the second_baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. + + + :param second_baseline_group: The second_baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501 + :type: FactorValueBasicValueObject + """ + + self._second_baseline_group = second_baseline_group + @property def results(self): """Gets the results of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501 diff --git a/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py index 162bd26..9287f7e 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/differential_expression_analysis_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_value_object.py index 265c99e..46beb1c 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/experiment_expression_levels_value_object.py b/gemmapy/sdk/models/experiment_expression_levels_value_object.py index 7ec522e..e7ad6b1 100644 --- a/gemmapy/sdk/models/experiment_expression_levels_value_object.py +++ b/gemmapy/sdk/models/experiment_expression_levels_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/experimental_factor_value_object.py b/gemmapy/sdk/models/experimental_factor_value_object.py index d494223..f30f079 100644 --- a/gemmapy/sdk/models/experimental_factor_value_object.py +++ b/gemmapy/sdk/models/experimental_factor_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/expression_experiment_set_value_object.py b/gemmapy/sdk/models/expression_experiment_set_value_object.py index 7f6921d..31c472a 100644 --- a/gemmapy/sdk/models/expression_experiment_set_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/expression_experiment_value_object.py b/gemmapy/sdk/models/expression_experiment_value_object.py index 1b61f67..f5d2be3 100644 --- a/gemmapy/sdk/models/expression_experiment_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py b/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py index 71afdf0..b508889 100644 --- a/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/external_database_value_object.py b/gemmapy/sdk/models/external_database_value_object.py index ef81a9e..5ae2c5d 100644 --- a/gemmapy/sdk/models/external_database_value_object.py +++ b/gemmapy/sdk/models/external_database_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/factor_value_basic_value_object.py b/gemmapy/sdk/models/factor_value_basic_value_object.py index 4f0e41f..65bc60d 100644 --- a/gemmapy/sdk/models/factor_value_basic_value_object.py +++ b/gemmapy/sdk/models/factor_value_basic_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/factor_value_value_object.py b/gemmapy/sdk/models/factor_value_value_object.py index 9122f5a..e5f96e4 100644 --- a/gemmapy/sdk/models/factor_value_value_object.py +++ b/gemmapy/sdk/models/factor_value_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_array_design.py b/gemmapy/sdk/models/filter_arg_array_design.py index 0a16e81..4965dd1 100644 --- a/gemmapy/sdk/models/filter_arg_array_design.py +++ b/gemmapy/sdk/models/filter_arg_array_design.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py b/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py index b32cca9..3b20d17 100644 --- a/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py +++ b/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_expression_experiment.py b/gemmapy/sdk/models/filter_arg_expression_experiment.py index 121d29e..9354187 100644 --- a/gemmapy/sdk/models/filter_arg_expression_experiment.py +++ b/gemmapy/sdk/models/filter_arg_expression_experiment.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py index a82f4e1..13a36c2 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py index ae96807..3aa8396 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py index 3257d3a..480cb74 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py index ff5c222..7036113 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py index ab2a17d..4c07251 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/geeq_value_object.py b/gemmapy/sdk/models/geeq_value_object.py index 500295a..5c94707 100644 --- a/gemmapy/sdk/models/geeq_value_object.py +++ b/gemmapy/sdk/models/geeq_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene.py b/gemmapy/sdk/models/gene.py index be13f2f..891c194 100644 --- a/gemmapy/sdk/models/gene.py +++ b/gemmapy/sdk/models/gene.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene1.py b/gemmapy/sdk/models/gene1.py index 73fed55..fa1d81e 100644 --- a/gemmapy/sdk/models/gene1.py +++ b/gemmapy/sdk/models/gene1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene2.py b/gemmapy/sdk/models/gene2.py index 4b2afb0..5e7434a 100644 --- a/gemmapy/sdk/models/gene2.py +++ b/gemmapy/sdk/models/gene2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene3.py b/gemmapy/sdk/models/gene3.py index bc2fcae..6da4040 100644 --- a/gemmapy/sdk/models/gene3.py +++ b/gemmapy/sdk/models/gene3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene4.py b/gemmapy/sdk/models/gene4.py index 207c5c0..f06ea2a 100644 --- a/gemmapy/sdk/models/gene4.py +++ b/gemmapy/sdk/models/gene4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_taxon.py b/gemmapy/sdk/models/gene5.py similarity index 92% rename from gemmapy/sdk/models/sort_arg_taxon.py rename to gemmapy/sdk/models/gene5.py index 0ff9bd7..f810d6d 100644 --- a/gemmapy/sdk/models/sort_arg_taxon.py +++ b/gemmapy/sdk/models/gene5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -15,7 +15,7 @@ import six -class SortArgTaxon(object): +class Gene5(object): """NOTE: This class is auto generated by the swagger code generator program. Do not edit the class manually. @@ -34,7 +34,7 @@ class SortArgTaxon(object): } def __init__(self): # noqa: E501 - """SortArgTaxon - a model defined in Swagger""" # noqa: E501 + """Gene5 - a model defined in Swagger""" # noqa: E501 self.discriminator = None def to_dict(self): @@ -58,7 +58,7 @@ def to_dict(self): )) else: result[attr] = value - if issubclass(SortArgTaxon, dict): + if issubclass(Gene5, dict): for key, value in self.items(): result[key] = value @@ -74,7 +74,7 @@ def __repr__(self): def __eq__(self, other): """Returns true if both objects are equal""" - if not isinstance(other, SortArgTaxon): + if not isinstance(other, Gene5): return False return self.__dict__ == other.__dict__ diff --git a/gemmapy/sdk/models/gene_arg.py b/gemmapy/sdk/models/gene_arg.py index cb2c5f0..58465f8 100644 --- a/gemmapy/sdk/models/gene_arg.py +++ b/gemmapy/sdk/models/gene_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_element_expressions_value_object.py b/gemmapy/sdk/models/gene_element_expressions_value_object.py index ca19530..94274d3 100644 --- a/gemmapy/sdk/models/gene_element_expressions_value_object.py +++ b/gemmapy/sdk/models/gene_element_expressions_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_ontology_term_value_object.py b/gemmapy/sdk/models/gene_ontology_term_value_object.py index d72b794..b194aa2 100644 --- a/gemmapy/sdk/models/gene_ontology_term_value_object.py +++ b/gemmapy/sdk/models/gene_ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_set_value_object.py b/gemmapy/sdk/models/gene_set_value_object.py index 598e169..8641fbf 100644 --- a/gemmapy/sdk/models/gene_set_value_object.py +++ b/gemmapy/sdk/models/gene_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_value_object.py b/gemmapy/sdk/models/gene_value_object.py index 111b5d0..292028e 100644 --- a/gemmapy/sdk/models/gene_value_object.py +++ b/gemmapy/sdk/models/gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/limited_response_data_object_annotation_with_usage_statistics_value_object.py b/gemmapy/sdk/models/limited_response_data_object_annotation_with_usage_statistics_value_object.py index 72f538d..c0cd8eb 100644 --- a/gemmapy/sdk/models/limited_response_data_object_annotation_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/limited_response_data_object_annotation_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/limited_response_data_object_array_design_with_usage_statistics_value_object.py b/gemmapy/sdk/models/limited_response_data_object_array_design_with_usage_statistics_value_object.py index 17d9bc4..d2086e3 100644 --- a/gemmapy/sdk/models/limited_response_data_object_array_design_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/limited_response_data_object_array_design_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/measurement_value_object.py b/gemmapy/sdk/models/measurement_value_object.py index 410d1ff..a5e810a 100644 --- a/gemmapy/sdk/models/measurement_value_object.py +++ b/gemmapy/sdk/models/measurement_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py b/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py index 624294e..abe90e1 100644 --- a/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py +++ b/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/ontology_term_value_object.py b/gemmapy/sdk/models/ontology_term_value_object.py index 8f5147c..0c4325b 100644 --- a/gemmapy/sdk/models/ontology_term_value_object.py +++ b/gemmapy/sdk/models/ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py index af9e7de..fdb14a5 100644 --- a/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py +++ b/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py index 42c481b..9b60f62 100644 --- a/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py new file mode 100644 index 0000000..608b80c --- /dev/null +++ b/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py @@ -0,0 +1,240 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.7.5 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class PaginatedResponseDataObjectGeneValueObject(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + 'data': 'list[GeneValueObject]', + 'group_by': 'list[str]', + 'sort': 'SortValueObject', + 'offset': 'int', + 'limit': 'int', + 'total_elements': 'int' + } + + attribute_map = { + 'data': 'data', + 'group_by': 'groupBy', + 'sort': 'sort', + 'offset': 'offset', + 'limit': 'limit', + 'total_elements': 'totalElements' + } + + def __init__(self, data=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None): # noqa: E501 + """PaginatedResponseDataObjectGeneValueObject - a model defined in Swagger""" # noqa: E501 + self._data = None + self._group_by = None + self._sort = None + self._offset = None + self._limit = None + self._total_elements = None + self.discriminator = None + if data is not None: + self.data = data + if group_by is not None: + self.group_by = group_by + if sort is not None: + self.sort = sort + if offset is not None: + self.offset = offset + if limit is not None: + self.limit = limit + if total_elements is not None: + self.total_elements = total_elements + + @property + def data(self): + """Gets the data of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The data of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: list[GeneValueObject] + """ + return self._data + + @data.setter + def data(self, data): + """Sets the data of this PaginatedResponseDataObjectGeneValueObject. + + + :param data: The data of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: list[GeneValueObject] + """ + + self._data = data + + @property + def group_by(self): + """Gets the group_by of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The group_by of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: list[str] + """ + return self._group_by + + @group_by.setter + def group_by(self, group_by): + """Sets the group_by of this PaginatedResponseDataObjectGeneValueObject. + + + :param group_by: The group_by of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: list[str] + """ + + self._group_by = group_by + + @property + def sort(self): + """Gets the sort of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The sort of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: SortValueObject + """ + return self._sort + + @sort.setter + def sort(self, sort): + """Sets the sort of this PaginatedResponseDataObjectGeneValueObject. + + + :param sort: The sort of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: SortValueObject + """ + + self._sort = sort + + @property + def offset(self): + """Gets the offset of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The offset of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._offset + + @offset.setter + def offset(self, offset): + """Sets the offset of this PaginatedResponseDataObjectGeneValueObject. + + + :param offset: The offset of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: int + """ + + self._offset = offset + + @property + def limit(self): + """Gets the limit of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The limit of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._limit + + @limit.setter + def limit(self, limit): + """Sets the limit of this PaginatedResponseDataObjectGeneValueObject. + + + :param limit: The limit of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: int + """ + + self._limit = limit + + @property + def total_elements(self): + """Gets the total_elements of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + + + :return: The total_elements of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._total_elements + + @total_elements.setter + def total_elements(self, total_elements): + """Sets the total_elements of this PaginatedResponseDataObjectGeneValueObject. + + + :param total_elements: The total_elements of this PaginatedResponseDataObjectGeneValueObject. # noqa: E501 + :type: int + """ + + self._total_elements = total_elements + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(PaginatedResponseDataObjectGeneValueObject, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, PaginatedResponseDataObjectGeneValueObject): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/physical_location_value_object.py b/gemmapy/sdk/models/physical_location_value_object.py index 59f3c3a..fc2168f 100644 --- a/gemmapy/sdk/models/physical_location_value_object.py +++ b/gemmapy/sdk/models/physical_location_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform.py b/gemmapy/sdk/models/platform.py index 6469875..f839dd1 100644 --- a/gemmapy/sdk/models/platform.py +++ b/gemmapy/sdk/models/platform.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform1.py b/gemmapy/sdk/models/platform1.py index 2dadf08..ace45c3 100644 --- a/gemmapy/sdk/models/platform1.py +++ b/gemmapy/sdk/models/platform1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform2.py b/gemmapy/sdk/models/platform2.py index cadb623..4d98094 100644 --- a/gemmapy/sdk/models/platform2.py +++ b/gemmapy/sdk/models/platform2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform3.py b/gemmapy/sdk/models/platform3.py index 360e60a..4cadadd 100644 --- a/gemmapy/sdk/models/platform3.py +++ b/gemmapy/sdk/models/platform3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform4.py b/gemmapy/sdk/models/platform4.py index 2cf9ff2..d836d7b 100644 --- a/gemmapy/sdk/models/platform4.py +++ b/gemmapy/sdk/models/platform4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform5.py b/gemmapy/sdk/models/platform5.py index d0f834b..55dddd3 100644 --- a/gemmapy/sdk/models/platform5.py +++ b/gemmapy/sdk/models/platform5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform_arg.py b/gemmapy/sdk/models/platform_arg.py index f1cf8d0..c2e4489 100644 --- a/gemmapy/sdk/models/platform_arg.py +++ b/gemmapy/sdk/models/platform_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/probe.py b/gemmapy/sdk/models/probe.py index 2b1b6e8..650f91e 100644 --- a/gemmapy/sdk/models/probe.py +++ b/gemmapy/sdk/models/probe.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type.py b/gemmapy/sdk/models/quantitation_type.py index a881178..9ef59fc 100644 --- a/gemmapy/sdk/models/quantitation_type.py +++ b/gemmapy/sdk/models/quantitation_type.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type_arg.py b/gemmapy/sdk/models/quantitation_type_arg.py index b99ed89..c1cdcc5 100644 --- a/gemmapy/sdk/models/quantitation_type_arg.py +++ b/gemmapy/sdk/models/quantitation_type_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type_value_object.py b/gemmapy/sdk/models/quantitation_type_value_object.py index 89e52a8..9800b6b 100644 --- a/gemmapy/sdk/models/quantitation_type_value_object.py +++ b/gemmapy/sdk/models/quantitation_type_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py index 0ccc99c..f5f00ea 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py index 7050c6e..fd40b6d 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_response_data_object_category_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_response_data_object_category_with_usage_statistics_value_object.py index e3e6111..0479e5e 100644 --- a/gemmapy/sdk/models/queried_and_filtered_response_data_object_category_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_response_data_object_category_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_response_data_object_taxon_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_response_data_object_taxon_with_usage_statistics_value_object.py index 5ee84a6..eaefad6 100644 --- a/gemmapy/sdk/models/queried_and_filtered_response_data_object_taxon_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_response_data_object_taxon_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/query_arg.py b/gemmapy/sdk/models/query_arg.py index 4382f25..ce62fc5 100644 --- a/gemmapy/sdk/models/query_arg.py +++ b/gemmapy/sdk/models/query_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_api_info_value_object.py b/gemmapy/sdk/models/response_data_object_api_info_value_object.py index f8e8e44..c3e13ac 100644 --- a/gemmapy/sdk/models/response_data_object_api_info_value_object.py +++ b/gemmapy/sdk/models/response_data_object_api_info_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/response_data_object_differential_expression_analysis_result_set_value_object.py index d379627..f894172 100644 --- a/gemmapy/sdk/models/response_data_object_differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/response_data_object_differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py b/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py index 40944c7..bfc063f 100644 --- a/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py b/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py index e703359..425d5b5 100644 --- a/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py b/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py index 295b924..53d2d5c 100644 --- a/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py b/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py index 97880ae..1c99bd5 100644 --- a/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py b/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py index cd4ab37..ed29ae4 100644 --- a/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py b/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py index 2c9c2b6..bec52b3 100644 --- a/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_gene_value_object.py b/gemmapy/sdk/models/response_data_object_list_gene_value_object.py index 1e88fd0..d5911e9 100644 --- a/gemmapy/sdk/models/response_data_object_list_gene_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py b/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py index 06d0e1f..f66022b 100644 --- a/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py b/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py index d39a93b..c8c43b3 100644 --- a/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_long.py b/gemmapy/sdk/models/response_data_object_long.py index d1125de..a43fa11 100644 --- a/gemmapy/sdk/models/response_data_object_long.py +++ b/gemmapy/sdk/models/response_data_object_long.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py b/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py index 57dfaed..289c49c 100644 --- a/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py +++ b/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py b/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py index 8f088b9..bc90670 100644 --- a/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py +++ b/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py b/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py index c2b52a8..290d058 100644 --- a/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py +++ b/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_error_object.py b/gemmapy/sdk/models/response_error_object.py index 52c02a4..60ce9e4 100644 --- a/gemmapy/sdk/models/response_error_object.py +++ b/gemmapy/sdk/models/response_error_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_type.py b/gemmapy/sdk/models/search_result_type.py index 2663b48..50751d8 100644 --- a/gemmapy/sdk/models/search_result_type.py +++ b/gemmapy/sdk/models/search_result_type.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py b/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py index 8d434ff..5e9897c 100644 --- a/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_value_object_object.py b/gemmapy/sdk/models/search_result_value_object_object.py index e21b8ce..34f1a60 100644 --- a/gemmapy/sdk/models/search_result_value_object_object.py +++ b/gemmapy/sdk/models/search_result_value_object_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_results_response_data_object.py b/gemmapy/sdk/models/search_results_response_data_object.py index 7ac58bc..ef4703b 100644 --- a/gemmapy/sdk/models/search_results_response_data_object.py +++ b/gemmapy/sdk/models/search_results_response_data_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_settings_value_object.py b/gemmapy/sdk/models/search_settings_value_object.py index 35f744c..f70780e 100644 --- a/gemmapy/sdk/models/search_settings_value_object.py +++ b/gemmapy/sdk/models/search_settings_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/simple_svd_value_object.py b/gemmapy/sdk/models/simple_svd_value_object.py index 9200c89..0364be8 100644 --- a/gemmapy/sdk/models/simple_svd_value_object.py +++ b/gemmapy/sdk/models/simple_svd_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_array_design.py b/gemmapy/sdk/models/sort_arg_array_design.py index b5578ca..6062386 100644 --- a/gemmapy/sdk/models/sort_arg_array_design.py +++ b/gemmapy/sdk/models/sort_arg_array_design.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py b/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py index 30c6003..c77ab4d 100644 --- a/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py +++ b/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_expression_experiment.py b/gemmapy/sdk/models/sort_arg_expression_experiment.py index 36b96f6..4558102 100644 --- a/gemmapy/sdk/models/sort_arg_expression_experiment.py +++ b/gemmapy/sdk/models/sort_arg_expression_experiment.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_value_object.py b/gemmapy/sdk/models/sort_value_object.py index ce2bd11..c524501 100644 --- a/gemmapy/sdk/models/sort_value_object.py +++ b/gemmapy/sdk/models/sort_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/statement_value_object.py b/gemmapy/sdk/models/statement_value_object.py index a3d86d2..fbd4134 100644 --- a/gemmapy/sdk/models/statement_value_object.py +++ b/gemmapy/sdk/models/statement_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxa.py b/gemmapy/sdk/models/taxa.py new file mode 100644 index 0000000..fa4b72f --- /dev/null +++ b/gemmapy/sdk/models/taxa.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.7.5 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Taxa(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Taxa - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Taxa, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Taxa): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/taxon.py b/gemmapy/sdk/models/taxon.py index 4856a4b..ccccb37 100644 --- a/gemmapy/sdk/models/taxon.py +++ b/gemmapy/sdk/models/taxon.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon1.py b/gemmapy/sdk/models/taxon1.py index b5a981d..2996de8 100644 --- a/gemmapy/sdk/models/taxon1.py +++ b/gemmapy/sdk/models/taxon1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon2.py b/gemmapy/sdk/models/taxon2.py index 5e79773..d222507 100644 --- a/gemmapy/sdk/models/taxon2.py +++ b/gemmapy/sdk/models/taxon2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon3.py b/gemmapy/sdk/models/taxon3.py index cdc6118..cf0941b 100644 --- a/gemmapy/sdk/models/taxon3.py +++ b/gemmapy/sdk/models/taxon3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon4.py b/gemmapy/sdk/models/taxon4.py index 6a69cb4..6ba5ff3 100644 --- a/gemmapy/sdk/models/taxon4.py +++ b/gemmapy/sdk/models/taxon4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon5.py b/gemmapy/sdk/models/taxon5.py index fb68192..75677fa 100644 --- a/gemmapy/sdk/models/taxon5.py +++ b/gemmapy/sdk/models/taxon5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon6.py b/gemmapy/sdk/models/taxon6.py index 45c885e..cad58b8 100644 --- a/gemmapy/sdk/models/taxon6.py +++ b/gemmapy/sdk/models/taxon6.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon7.py b/gemmapy/sdk/models/taxon7.py new file mode 100644 index 0000000..f5c5be3 --- /dev/null +++ b/gemmapy/sdk/models/taxon7.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.7.5 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Taxon7(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Taxon7 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Taxon7, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Taxon7): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/taxon8.py b/gemmapy/sdk/models/taxon8.py new file mode 100644 index 0000000..ebf2766 --- /dev/null +++ b/gemmapy/sdk/models/taxon8.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.7.5 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Taxon8(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Taxon8 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Taxon8, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Taxon8): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/taxon9.py b/gemmapy/sdk/models/taxon9.py new file mode 100644 index 0000000..eb99fa5 --- /dev/null +++ b/gemmapy/sdk/models/taxon9.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.7.5 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Taxon9(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Taxon9 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Taxon9, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Taxon9): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/taxon_arg.py b/gemmapy/sdk/models/taxon_arg.py index 95ac665..b8002be 100644 --- a/gemmapy/sdk/models/taxon_arg.py +++ b/gemmapy/sdk/models/taxon_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon_value_object.py b/gemmapy/sdk/models/taxon_value_object.py index 7410163..a9fe636 100644 --- a/gemmapy/sdk/models/taxon_value_object.py +++ b/gemmapy/sdk/models/taxon_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py b/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py index 9ba955d..ab549eb 100644 --- a/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/vector_element_value_object.py b/gemmapy/sdk/models/vector_element_value_object.py index 6b51503..5f7c717 100644 --- a/gemmapy/sdk/models/vector_element_value_object.py +++ b/gemmapy/sdk/models/vector_element_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/well_composed_error_body.py b/gemmapy/sdk/models/well_composed_error_body.py index 9d38d07..b3e1ebf 100644 --- a/gemmapy/sdk/models/well_composed_error_body.py +++ b/gemmapy/sdk/models/well_composed_error_body.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/rest.py b/gemmapy/sdk/rest.py index ee2fb82..d22d793 100644 --- a/gemmapy/sdk/rest.py +++ b/gemmapy/sdk/rest.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.4 + OpenAPI spec version: 2.7.5 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/sdk-gen/openapi.yaml b/sdk-gen/openapi.yaml index 9bded23..7e72fc5 100644 --- a/sdk-gen/openapi.yaml +++ b/sdk-gen/openapi.yaml @@ -14,7 +14,7 @@ info: name: Pavlidis Lab Support url: https://pavlab.msl.ubc.ca/ email: pavlab-support@msl.ubc.ca - version: 2.7.4 + version: 2.7.5 servers: - url: https://gemma.msl.ubc.ca/rest/v2 description: Gemma @@ -808,6 +808,80 @@ paths: application/json: schema: $ref: '#/components/schemas/ResponseDataObjectListExperimentExpressionLevelsValueObject' + /datasets/{datasets}/expressions/taxa/{taxa}/genes/{genes}: + get: + summary: Retrieve the expression data matrix of a set of datasets and genes + operationId: getDatasetExpressionForGenesInTaxa + parameters: + - name: datasets + in: path + required: true + schema: + type: array + items: + oneOf: + - type: integer + description: A numerical dataset identifier. + format: int64 + - type: string + description: A dataset short name. + - name: taxa + in: path + required: true + schema: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + - name: genes + in: path + required: true + schema: + type: array + items: + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with + 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ + - name: keepNonSpecific + in: query + schema: + type: boolean + default: false + - name: consolidate + in: query + schema: + type: string + description: An option for gene expression level consolidation. + enum: + - pickmax + - pickvar + - average + responses: + default: + description: default response + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseDataObjectListExperimentExpressionLevelsValueObject' /datasets/{datasets}/expressions/pca: get: summary: Retrieve the principal components (PCA) of a set of datasets @@ -1434,7 +1508,7 @@ paths: content: application/json: schema: - $ref: '#/components/schemas/FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject' + $ref: '#/components/schemas/PaginatedResponseDataObjectCompositeSequenceValueObject' /genes/{genes}: get: summary: Retrieve genes matching gene identifiers @@ -1467,6 +1541,35 @@ paths: application/json: schema: $ref: '#/components/schemas/ResponseDataObjectListGeneValueObject' + /genes: + get: + summary: Retrieve all genes + operationId: getGenes_1 + parameters: + - name: offset + in: query + schema: + minimum: 0 + type: integer + description: The offset of the first retrieved result. + format: int32 + default: 0 + - name: limit + in: query + schema: + maximum: 100 + minimum: 1 + type: integer + description: Limit the number of results retrieved. + format: int32 + default: 20 + responses: + default: + description: default response + content: + application/json: + schema: + $ref: '#/components/schemas/PaginatedResponseDataObjectGeneValueObject' /platforms/count: get: summary: Count platforms matching the provided filter @@ -1823,16 +1926,16 @@ paths: items: type: string enum: + - ubic.gemma.model.expression.BlacklistedEntity - ubic.gemma.model.expression.arrayDesign.ArrayDesign - - ubic.gemma.model.expression.experiment.ExpressionExperiment + - ubic.gemma.model.genome.biosequence.BioSequence + - ubic.gemma.model.association.phenotype.PhenotypeAssociation + - ubic.gemma.model.genome.gene.GeneSet - ubic.gemma.model.genome.Gene + - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - ubic.gemma.model.common.description.BibliographicReference - - ubic.gemma.model.expression.BlacklistedEntity - ubic.gemma.model.expression.designElement.CompositeSequence - - ubic.gemma.model.genome.gene.GeneSet - - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - - ubic.gemma.model.genome.biosequence.BioSequence - - ubic.gemma.model.association.phenotype.PhenotypeAssociation + - ubic.gemma.model.expression.experiment.ExpressionExperiment - name: limit in: query description: Maximum number of search results to return; capped at 2000 unless @@ -1874,10 +1977,104 @@ paths: application/json: schema: $ref: '#/components/schemas/ResponseErrorObject' - /taxa/{taxon}/genes/{gene}/locations: + /taxa: get: - summary: Retrieve physical locations for a given gene and taxon - operationId: getGeneLocationsInTaxon + summary: Retrieve all available taxa + operationId: getTaxa + responses: + default: + description: default response + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseDataObjectListTaxonValueObject' + /taxa/{taxa}: + get: + summary: Retrieve taxa by their identifiers + operationId: getTaxaByIds + parameters: + - name: taxa + in: path + required: true + schema: + type: array + items: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + responses: + default: + description: default response + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseDataObjectListTaxonValueObject' + /taxa/{taxon}/datasets: + get: + summary: Retrieve the datasets for a given taxon + operationId: getTaxonDatasets + parameters: + - name: taxon + in: path + required: true + schema: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + - name: filter + in: query + schema: + $ref: '#/components/schemas/FilterArgExpressionExperiment' + - name: offset + in: query + schema: + minimum: 0 + type: integer + description: The offset of the first retrieved result. + format: int32 + default: 0 + - name: limit + in: query + schema: + maximum: 100 + minimum: 1 + type: integer + description: Limit the number of results retrieved. + format: int32 + default: 20 + - name: sort + in: query + schema: + $ref: '#/components/schemas/SortArgExpressionExperiment' + responses: + default: + description: default response + content: + application/json: + schema: + $ref: '#/components/schemas/FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject' + /taxa/{taxon}/genes/{gene}/goTerms: + get: + summary: Retrieve the GO terms associated to a gene in a given taxon + operationId: getTaxonGeneGoTerms parameters: - name: taxon in: path @@ -1918,52 +2115,119 @@ paths: content: application/json: schema: - $ref: '#/components/schemas/ResponseDataObjectListPhysicalLocationValueObject' - /taxa: + $ref: '#/components/schemas/ResponseDataObjectListGeneOntologyTermValueObject' + /taxa/{taxon}/genes/{gene}/locations: get: - summary: Retrieve all available taxa - operationId: getTaxa + summary: Retrieve physical locations for a given gene and taxon + operationId: getTaxonGeneLocations + parameters: + - name: taxon + in: path + required: true + schema: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + - name: gene + in: path + required: true + schema: + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ responses: default: description: default response content: application/json: schema: - $ref: '#/components/schemas/ResponseDataObjectListTaxonValueObject' - /taxa/{taxa}: + $ref: '#/components/schemas/ResponseDataObjectListPhysicalLocationValueObject' + /taxa/{taxon}/genes/{gene}/probes: get: - summary: Retrieve taxa by their identifiers - operationId: getTaxaByIds + summary: Retrieve the probes associated to a genes across all platforms in a + given taxon + operationId: getTaxonGeneProbes parameters: - - name: taxa + - name: taxon + in: path + required: true + schema: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + - name: gene in: path required: true schema: - type: array - items: - oneOf: - - type: integer - description: A numerical taxon identifier. - format: int64 - - type: integer - description: An NCBI taxon identifier. - format: int64 - externalDocs: - url: https://www.ncbi.nlm.nih.gov/taxonomy - - type: string - description: A taxon identifier that matches either its scientific or - common name. + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ + - name: offset + in: query + schema: + minimum: 0 + type: integer + description: The offset of the first retrieved result. + format: int32 + default: 0 + - name: limit + in: query + schema: + maximum: 100 + minimum: 1 + type: integer + description: Limit the number of results retrieved. + format: int32 + default: 20 responses: default: description: default response content: application/json: schema: - $ref: '#/components/schemas/ResponseDataObjectListTaxonValueObject' - /taxa/{taxon}/datasets: + $ref: '#/components/schemas/PaginatedResponseDataObjectCompositeSequenceValueObject' + /taxa/{taxon}/genes: get: - summary: Retrieve the datasets for a given taxon - operationId: getTaxonDatasets + summary: Retrieve all genes in a given taxon + operationId: getTaxonGenes parameters: - name: taxon in: path @@ -1981,10 +2245,6 @@ paths: - type: string description: A taxon identifier that matches either its scientific or common name. - - name: filter - in: query - schema: - $ref: '#/components/schemas/FilterArgExpressionExperiment' - name: offset in: query schema: @@ -2002,21 +2262,17 @@ paths: description: Limit the number of results retrieved. format: int32 default: 20 - - name: sort - in: query - schema: - $ref: '#/components/schemas/SortArgTaxon' responses: default: description: default response content: application/json: schema: - $ref: '#/components/schemas/FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject' + $ref: '#/components/schemas/PaginatedResponseDataObjectGeneValueObject' /taxa/{taxon}/genes/{gene}: get: - summary: Retrieve all genes in a given taxon - operationId: getTaxonGenes + summary: Retrieve genes matching gene identifiers in a given taxon + operationId: getTaxonGenesByIds parameters: - name: taxon in: path @@ -2038,19 +2294,22 @@ paths: in: path required: true schema: - oneOf: - - type: string - description: An Ensembl gene identifier which typically starts with 'ENSG'. - externalDocs: - url: https://www.ensembl.org/ - - type: string - description: An NCBI gene identifier. - externalDocs: - url: https://www.ncbi.nlm.nih.gov/gene - - type: string - description: An official gene symbol approved by HGNC. - externalDocs: - url: https://www.genenames.org/ + type: array + items: + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with + 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ responses: default: description: default response @@ -2548,6 +2807,8 @@ components: $ref: '#/components/schemas/ExperimentalFactorValueObject' baselineGroup: $ref: '#/components/schemas/FactorValueBasicValueObject' + secondBaselineGroup: + $ref: '#/components/schemas/FactorValueBasicValueObject' results: type: array items: @@ -5195,10 +5456,10 @@ components: type: array items: $ref: '#/components/schemas/DatabaseEntryValueObject' - taxonID: + numberOfExpressionExperiments: type: integer format: int64 - numberOfExpressionExperiments: + taxonID: type: integer format: int64 troubleDetails: @@ -5743,7 +6004,7 @@ components: \ the exact phrase \"alpha beta gamma\". \ \ |\n| Field | `shortName:GSE00001` \ \ | Results with short name GSE00001.
List of supported\ - \ fields

ubic.gemma.model.expression.experiment.ExpressionExperiment

ubic.gemma.model.genome.gene.GeneSet

ubic.gemma.model.expression.designElement.CompositeSequence

ubic.gemma.model.expression.arrayDesign.ArrayDesign

ubic.gemma.model.genome.Gene

ubic.gemma.model.genome.biosequence.BioSequence

\ + \ fields

ubic.gemma.model.genome.gene.GeneSet

ubic.gemma.model.expression.experiment.ExpressionExperiment

ubic.gemma.model.expression.designElement.CompositeSequence

ubic.gemma.model.expression.arrayDesign.ArrayDesign

ubic.gemma.model.genome.Gene

ubic.gemma.model.genome.biosequence.BioSequence

\ \ |\n| Prefix | `alpha*` | Results must start with\ \ \"alpha\". \ \ |\n| Wildcard | `BRCA?` \ @@ -5761,6 +6022,33 @@ components: externalDocs: url: https://lucene.apache.org/core/3_6_2/queryparsersyntax.html x-gemma-searchable-properties: + ubic.gemma.model.genome.gene.GeneSet: + - description + - name + - characteristics.value + - characteristics.valueUri + - literatureSources.abstractText + - literatureSources.authorList + - literatureSources.fullTextUri + - literatureSources.name + - literatureSources.title + - sourceAccession.accession + - literatureSources.chemicals.name + - literatureSources.chemicals.registryNumber + - literatureSources.keywords.term + - literatureSources.meshTerms.term + - literatureSources.pubAccession.accession + - members.gene.ensemblId + - members.gene.name + - members.gene.ncbiGeneId + - members.gene.officialName + - members.gene.officialSymbol + - members.gene.accessions.accession + - members.gene.aliases.alias + - members.gene.products.name + - members.gene.products.ncbiGi + - members.gene.products.previousNcbiId + - members.gene.products.accessions.accession ubic.gemma.model.expression.experiment.ExpressionExperiment: - description - name @@ -5806,33 +6094,6 @@ components: - experimentalDesign.experimentalFactors.factorValues.characteristics.secondObjectUri - experimentalDesign.experimentalFactors.factorValues.characteristics.value - experimentalDesign.experimentalFactors.factorValues.characteristics.valueUri - ubic.gemma.model.genome.gene.GeneSet: - - description - - name - - characteristics.value - - characteristics.valueUri - - literatureSources.abstractText - - literatureSources.authorList - - literatureSources.fullTextUri - - literatureSources.name - - literatureSources.title - - sourceAccession.accession - - literatureSources.chemicals.name - - literatureSources.chemicals.registryNumber - - literatureSources.keywords.term - - literatureSources.meshTerms.term - - literatureSources.pubAccession.accession - - members.gene.ensemblId - - members.gene.name - - members.gene.ncbiGeneId - - members.gene.officialName - - members.gene.officialSymbol - - members.gene.accessions.accession - - members.gene.aliases.alias - - members.gene.products.name - - members.gene.products.ncbiGi - - members.gene.products.previousNcbiId - - members.gene.products.accessions.accession ubic.gemma.model.expression.designElement.CompositeSequence: - description - name @@ -6177,15 +6438,13 @@ components: type: array items: $ref: '#/components/schemas/PhysicalLocationValueObject' - FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject: + PaginatedResponseDataObjectCompositeSequenceValueObject: type: object properties: data: type: array items: $ref: '#/components/schemas/CompositeSequenceValueObject' - filter: - type: string groupBy: type: array items: @@ -6208,6 +6467,28 @@ components: type: array items: $ref: '#/components/schemas/GeneValueObject' + PaginatedResponseDataObjectGeneValueObject: + type: object + properties: + data: + type: array + items: + $ref: '#/components/schemas/GeneValueObject' + groupBy: + type: array + items: + type: string + sort: + $ref: '#/components/schemas/SortValueObject' + offset: + type: integer + format: int32 + limit: + type: integer + format: int32 + totalElements: + type: integer + format: int64 FilterArgArrayDesign: type: string description: |- @@ -6754,20 +7035,13 @@ components: totalElements: type: integer format: int64 - CompositeSequenceArg: - oneOf: - - type: integer - description: A composite sequence numerical identifier. - format: int64 - - type: string - description: A composite sequence name. - FilteredAndPaginatedResponseDataObjectGeneValueObject: + FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject: type: object properties: data: type: array items: - $ref: '#/components/schemas/GeneValueObject' + $ref: '#/components/schemas/CompositeSequenceValueObject' filter: type: string groupBy: @@ -6785,13 +7059,22 @@ components: totalElements: type: integer format: int64 - PaginatedResponseDataObjectCompositeSequenceValueObject: + CompositeSequenceArg: + oneOf: + - type: integer + description: A composite sequence numerical identifier. + format: int64 + - type: string + description: A composite sequence name. + FilteredAndPaginatedResponseDataObjectGeneValueObject: type: object properties: data: type: array items: - $ref: '#/components/schemas/CompositeSequenceValueObject' + $ref: '#/components/schemas/GeneValueObject' + filter: + type: string groupBy: type: array items: @@ -7423,16 +7706,16 @@ components: items: type: string enum: + - ubic.gemma.model.expression.BlacklistedEntity - ubic.gemma.model.expression.arrayDesign.ArrayDesign - - ubic.gemma.model.expression.experiment.ExpressionExperiment + - ubic.gemma.model.genome.biosequence.BioSequence + - ubic.gemma.model.association.phenotype.PhenotypeAssociation + - ubic.gemma.model.genome.gene.GeneSet - ubic.gemma.model.genome.Gene + - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - ubic.gemma.model.common.description.BibliographicReference - - ubic.gemma.model.expression.BlacklistedEntity - ubic.gemma.model.expression.designElement.CompositeSequence - - ubic.gemma.model.genome.gene.GeneSet - - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - - ubic.gemma.model.genome.biosequence.BioSequence - - ubic.gemma.model.association.phenotype.PhenotypeAssociation + - ubic.gemma.model.expression.experiment.ExpressionExperiment ResponseDataObjectListTaxonValueObject: type: object properties: @@ -7440,90 +7723,6 @@ components: type: array items: $ref: '#/components/schemas/TaxonValueObject' - SortArgTaxon: - pattern: ^(\+|-?)(\w+)$ - type: string - description: |- - Order results by the given property and direction. The '+' sign indicate ascending order whereas the '-' indicate descending. - - Available properties: - - - commonName `string` - - externalDatabase.auditTrail.events.size `integer` - - externalDatabase.auditTrail.id `integer` - - externalDatabase.databaseSupplier.email `string` - - externalDatabase.databaseSupplier.id `integer` - - externalDatabase.databaseSupplier.name `string` - - externalDatabase.ftpUri `string` - - externalDatabase.id `integer` - - externalDatabase.lastUpdated `string` - - externalDatabase.localInstallDbName `string` - - externalDatabase.name `string` - - externalDatabase.releaseUrl `object` - - externalDatabase.releaseVersion `string` - - externalDatabase.type `string` (available values: ONTOLOGY, SEQUENCE, LITERATURE, EXPRESSION, GENOME, OTHER, PROTEIN) - - externalDatabase.webUri `string` - - id `integer` - - isGenesUsable `boolean` - - ncbiId `integer` - - scientificName `string` - - secondaryNcbiId `integer` - x-gemma-filterable-properties: - - name: commonName - type: string - - name: externalDatabase.auditTrail.events.size - type: integer - - name: externalDatabase.auditTrail.id - type: integer - - name: externalDatabase.databaseSupplier.email - type: string - - name: externalDatabase.databaseSupplier.id - type: integer - - name: externalDatabase.databaseSupplier.name - type: string - - name: externalDatabase.ftpUri - type: string - - name: externalDatabase.id - type: integer - - name: externalDatabase.lastUpdated - type: string - - name: externalDatabase.localInstallDbName - type: string - - name: externalDatabase.name - type: string - - name: externalDatabase.releaseUrl - type: object - - name: externalDatabase.releaseVersion - type: string - - name: externalDatabase.type - type: string - allowedValues: - - value: ONTOLOGY - label: Ontology - - value: SEQUENCE - label: Sequence - - value: LITERATURE - label: Literature - - value: EXPRESSION - label: Expression - - value: GENOME - label: Genome - - value: OTHER - label: Other - - value: PROTEIN - label: Protein - - name: externalDatabase.webUri - type: string - - name: id - type: integer - - name: isGenesUsable - type: boolean - - name: ncbiId - type: integer - - name: scientificName - type: string - - name: secondaryNcbiId - type: integer securitySchemes: basicAuth: type: http