From 4352fec8098bb9bc48382822ff849fc73d600d9d Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Tue, 21 May 2024 16:14:35 -0700 Subject: [PATCH] Add ssRNA-seq to the list of supported strategies --- rnaseq_pipeline/miniml_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/rnaseq_pipeline/miniml_utils.py b/rnaseq_pipeline/miniml_utils.py index 1fe754a5..2cd9680e 100644 --- a/rnaseq_pipeline/miniml_utils.py +++ b/rnaseq_pipeline/miniml_utils.py @@ -31,7 +31,7 @@ def collect_geo_samples(f): sra_relation = x.find("miniml:Relation[@type='SRA']", ns) if gsm_id is None or platform_id is None or library_strategy is None or sra_relation is None: continue - if library_strategy.text == 'RNA-Seq': + if library_strategy.text in ['RNA-Seq', 'ssRNA-seq']: gsm_identifiers.add(gsm_id.text) return gsm_identifiers