From acf0e8405bccfc174fc920e19acb25b85591997b Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Fri, 17 May 2024 10:47:40 -0700 Subject: [PATCH] Remove unused STAR_CLEANUP_SCRIPT config --- example.luigi.cfg | 3 --- rnaseq_pipeline/config.py | 2 -- 2 files changed, 5 deletions(-) diff --git a/example.luigi.cfg b/example.luigi.cfg index 5bbac6b4..0ad2d418 100644 --- a/example.luigi.cfg +++ b/example.luigi.cfg @@ -45,9 +45,6 @@ ALIGNQCDIR=aligned-qc QUANTDIR=quantified BATCHINFODIR=batch-info -# STAR -STAR_CLEANUP_SCRIPT=scripts/clean-unused-shm-objects - # RSEM RSEM_DIR=contrib/RSEM diff --git a/rnaseq_pipeline/config.py b/rnaseq_pipeline/config.py index 880d0504..42071982 100644 --- a/rnaseq_pipeline/config.py +++ b/rnaseq_pipeline/config.py @@ -16,8 +16,6 @@ class rnaseq_pipeline(luigi.Config): QUANTDIR = luigi.Parameter() BATCHINFODIR = luigi.Parameter() - STAR_CLEANUP_SCRIPT = luigi.Parameter() - RSEM_DIR = luigi.Parameter() GEMMACLI = luigi.Parameter()