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CITATION.cff
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cff-version: 1.2.0
title: >-
The Predictive Ecosystem Analyzer (PEcAn) is an
integrated ecological bioinformatics toolbox.
version: 1.8.0
abstract: >-
The Predictive Ecosystem Analyzer (PEcAn) (see
pecanproject.org) is an integrated ecological
bioinformatics toolbox (Dietze et al 2013, LeBauer
et al, 2013) that consists of: 1) a scientific
workflow system to manage the immense amounts of
publicly-available environmental data and 2) a
Bayesian data assimilation system to synthesize
this information within state-of-the-art ecosystems
models. This project is motivated by the fact that
many of the most pressing questions about global
change are not necessarily limited by the need to
collect new data as much as by our ability to
synthesize existing data. This project seeks to
improve this ability by developing a accessibe
framework for integrating multiple data sources in
a sensible manner.
license:
- BSD-3-Clause
- NCSA
doi: 10.5281/zenodo.5557914
message: >-
Please cite this software using the metadata from
'preferred-citation'.
type: software
authors:
- given-names: David LeBauer
affiliation: University of Arizona
orcid: 'https://orcid.org/0000-0001-7228-053X'
- given-names: Michael Dietze
orcid: 'https://orcid.org/0000-0002-2324-2518'
affiliation: Boston University
- given-names: Rob Kooper
email: kooper@illinois.edu
affiliation: National Center for Supercomputing Applications
orcid: 'https://orcid.org/0000-0002-5781-7287'
- affiliation: NASA Goddard
given-names: Alexey Shiklomanov
orcid: 'https://orcid.org/0000-0003-4022-5979'
- affiliation: James Hutton Institute
given-names: Betsy Cowdery
orcid: 'https://orcid.org/0000-0002-6538-6296'
- affiliation: University of Illinois, Urbana-Champaign
given-names: Hamze Dokoohaki
orcid: 'https://orcid.org/0000-0003-2131-7712'
- affiliation: Finnish Meteorological Institute
given-names: Istem Fer
orcid: 'https://orcid.org/0000-0001-8236-303X'
- affiliation: University of Michigan
given-names: Anthony Gardella
orcid: 'https://orcid.org/0000-0003-4380-3412'
- affiliation: Carnegie Mellon University
given-names: Luke Dramko
orcid: 'https://orcid.org/0000-0002-5845-5628'
- given-names: Ayush Pradad
- given-names: Shashank Singh
- given-names: Tanishq Jain
- affiliation: Boston University
given-names: Alexis Helgeson
- affiliation: Pacific Northwest National Laboratory / University of Maryland
given-names: Ben Bond-Lamberty
orcid: 'https://orcid.org/0000-0001-9525-4633'
- affiliation: Brookhaven National Laboratory
given-names: Shawn P. Serbin
orcid: 'https://orcid.org/0000-0003-4136-8971'
- affiliation: NASA Goddard
given-names: Ann Raiho
- affiliation: Microsoft Corporation
given-names: Tezan Sahu
orcid: 'https://orcid.org/0000-0003-1031-9683'
- given-names: Mukul Maheshwari
- affiliation: University of Cambridge
given-names: Anne Thomas
orcid: 'https://orcid.org/0000-0002-2808-6462'
- affiliation: Pools and Fluxes LLC
given-names: Chris Black
orcid: 'https://orcid.org/0000-0001-8382-298X'
- affiliation: Rutgers University
given-names: James Simkins
- affiliation: University of Wisconsin-Madison
given-names: Ankur Desai
orcid: 'https://orcid.org/0000-0002-5226-6041'
- affiliation: Worchester Academy
given-names: Joshua Mantooth
- given-names: Aman Kumar
- affiliation: Boston University
given-names: Liam Burke
- affiliation: Wentworth Institute of Technology
given-names: Afshin Pourmokhtarian
orcid: 'https://orcid.org/0000-0003-2453-1212'
- affiliation: Morton Arboretum
given-names: Christy Rollinson
- affiliation: PulseLabs AI
given-names: Shubham Agarwal
orcid: 'https://orcid.org/0000-0002-2977-9615'
- affiliation: Purdue University
given-names: Brady Hardiman
orcid: 'https://orcid.org/0000-0001-6833-9404'
- affiliation: University of New South Wales
given-names: Martin De Kauwe
orcid: 'https://orcid.org/0000-0002-3399-9098'
- given-names: Eugene
- affiliation: Boston University
given-names: Tess McCabe
orcid: 'https://orcid.org/0000-0002-8901-3267'
- affiliation: Boston University
given-names: Katie Ragosta
- given-names: Tony Cohen
- given-names: zhangwenx
- affiliation: Finnish Meteorological Institute
given-names: Tony Viskari
- given-names: Yan Zhao
- affiliation: Uber
given-names: Jing Xia
- given-names: Eric R. Scott
affiliation: University of Arizona
orcid: 'https://orcid.org/0000-0002-7430-7879'
- given-names: Harunobu Ishii
affiliation: Boston University Software & Application Innovation Lab(SAIL)
preferred-citation:
type: article
title: Facilitating feedbacks between field measurements and ecosystem models
authors:
- given-names: David S LeBauer
- given-names: Dan Wang
- given-names: Katherine Richter
- given-names: Carl Davidson
- given-names: Michael C Dietze
year: 2013
collection-title: Ecological Monographs
doi: 10.1890/12-0137.1
references:
- type: article
title: Facilitating feedbacks between field measurements and ecosystem models
authors:
- given-names: David S LeBauer
- given-names: Dan Wang
- given-names: Katherine Richter
- given-names: Carl Davidson
- given-names: Michael C Dietze
year: 2013
collection-title: Ecological Monographs
doi: 10.1890/12-0137.1
- type: article
title: Predicting yields of short-rotation hybrid poplar (Populus spp.) for the contiguous US through model-data synthesis
authors:
- given-names: Dan Wang
- given-names: David S LeBauer
- given-names: Michael C Dietze
year: 2013
collection-title: Ecological Applications
doi: 10.1890/12-0854.1
- type: article
title: On improving the communication between models and data
authors:
- given-names: Michael C Dietze
- given-names: David S LeBauer
- given-names: Rob Kooper
year: 2013
collection-title: Plant, Cell, & Environment
doi: 10.1111/pce.12043
- type: article
title: A quantitative assessment of a terrestrial biosphere model's data needs across North American biomes
authors:
- given-names: Michael C Dietze
- given-names: Shawn P Serbin
- given-names: Carl Davidson
- given-names: Ankur R Desai
- given-names: Xiaohui Feng
- given-names: Ryan Kelly
- given-names: Rob Kooper
- given-names: David LeBauer
- given-names: Josh Mantooth
- given-names: Kenton McHenry
- given-names: Dan Wang
year: 2014
collection-title: "Journal of Geophysical Research: Biogeosciences"
volume: 119
number: 3
pages: "286-300"
- type: article
title: Model-data assimilation of multiple phenological observations to constrain and predict leaf area index
authors:
- given-names: Toni Viskari
- given-names: Brady Hardiman
- given-names: Ankur R. Desai
- given-names: Michael C. Dietze
year: 2015
doi: 10.1890/14-0497.1
- type: article
title: Quantifying the influences of spectral resolution on uncertainty in leaf trait estimates through a Bayesian approach to RTM inversion
authors:
- given-names: Shiklomanov. A
- given-names: MC Dietze
- given-names: T Viskari
- given-names: PA Townsend
- given-names: SP Serbin
year: 2016
collection-title: Remote Sensing of the Environment
volume: 183
pages: "226-238"
- type: article
title: "BETYdb: a yield, trait, and ecosystem service database applied to second generation bioenergy feedstock production"
authors:
- given-names: David S LeBauer
- given-names: Rob Kooper
- given-names: Patrick Mulrooney
- given-names: Scott Rohde
- given-names: Dan Wang
- given-names: Stephen P Long
- given-names: Michael C Dietze
year: 2019
collection-title: GCB Bioenergy
volume: 10
number: 1
pages: "61-71"
doi: 10.1111/gcbb.12420
repository-code: https://github.com/pecanproject/pecan
repository-artifact: https://hub.docker.com/orgs/pecan
keywords:
- data science
- ecosystem models
- scientific visualization
- climate science
- Ecological Forecasting