diff --git a/models/dvmdostem/man/adjust.runmask.dvmdostem.Rd b/models/dvmdostem/man/adjust.runmask.dvmdostem.Rd index 85e34086253..b3e8fcb4a33 100644 --- a/models/dvmdostem/man/adjust.runmask.dvmdostem.Rd +++ b/models/dvmdostem/man/adjust.runmask.dvmdostem.Rd @@ -18,7 +18,7 @@ adjust.runmask.dvmdostem(siteDataPath, rundir, pixel_X, pixel_Y) \description{ Adjust the runmask for dvmdostem. This is necessary if you are using a mutisite dvmdostem dataset (more than one grid cell/pixel) -and you are not forcing the community (cmt or vegetation) type. In +and you are not forcing the community (cmt or vegetation) type. In other words you are using a vegetation map to determine the pixel's cmt type. In this case you must make sure that for the site and PFTs you have selected, the underlying veg map classifies the site as the diff --git a/models/dvmdostem/man/enforce.runmask.cmt.vegmap.harmony.Rd b/models/dvmdostem/man/enforce.runmask.cmt.vegmap.harmony.Rd index b81dc1bf71e..a6a67394549 100644 --- a/models/dvmdostem/man/enforce.runmask.cmt.vegmap.harmony.Rd +++ b/models/dvmdostem/man/enforce.runmask.cmt.vegmap.harmony.Rd @@ -3,8 +3,8 @@ \name{enforce.runmask.cmt.vegmap.harmony} \alias{enforce.runmask.cmt.vegmap.harmony} \title{Make sure that selected run mask pixel, veg map pixel value and CMT type are all copasetic. The -function calls stop() if there is anything inconsistent, for example more tha one pixel is -enabled in the run mask, or the enabled pixel's vegetation type does not match the +function calls stop() if there is anything inconsistent, for example more tha one pixel is +enabled in the run mask, or the enabled pixel's vegetation type does not match the vegetation/community type of the chosen PFTs.} \usage{ enforce.runmask.cmt.vegmap.harmony(siteDataPath, rundir, cmtnum) @@ -12,7 +12,7 @@ enforce.runmask.cmt.vegmap.harmony(siteDataPath, rundir, cmtnum) \arguments{ \item{siteDataPath}{is the path to the folder where we expect to find the dvmdostem input data files.} -\item{rundir}{is the path to the local running directory where customized files (config, parameters, +\item{rundir}{is the path to the local running directory where customized files (config, parameters, runmask etc) are copied to.} \item{cmtnum}{is the community type (vegetation type) that should be used for the run. Based on the @@ -23,8 +23,8 @@ none } \description{ Make sure that selected run mask pixel, veg map pixel value and CMT type are all copasetic. The -function calls stop() if there is anything inconsistent, for example more tha one pixel is -enabled in the run mask, or the enabled pixel's vegetation type does not match the +function calls stop() if there is anything inconsistent, for example more tha one pixel is +enabled in the run mask, or the enabled pixel's vegetation type does not match the vegetation/community type of the chosen PFTs. } \author{ diff --git a/models/dvmdostem/man/model2netcdf.dvmdostem.Rd b/models/dvmdostem/man/model2netcdf.dvmdostem.Rd index ef9e75305a3..d3cb4c0292d 100644 --- a/models/dvmdostem/man/model2netcdf.dvmdostem.Rd +++ b/models/dvmdostem/man/model2netcdf.dvmdostem.Rd @@ -19,7 +19,6 @@ model2netcdf.dvmdostem(outdir, runstart, runend, pecan_requested_vars) Code to convert dvmdostem netcdf output into into CF standard } \examples{ - \dontrun{ # example code here? } diff --git a/models/dvmdostem/man/requested_vars_string2list.Rd b/models/dvmdostem/man/requested_vars_string2list.Rd index c508937094b..db8de45b72c 100644 --- a/models/dvmdostem/man/requested_vars_string2list.Rd +++ b/models/dvmdostem/man/requested_vars_string2list.Rd @@ -15,8 +15,8 @@ requested_vars_string2list(req_v_str, outspec_path) a list of the requested variables } \description{ -Look up the "depends_on" in the output variable mapping, -accumulate a list of dvmdostem variables to turn on to support +Look up the "depends_on" in the output variable mapping, +accumulate a list of dvmdostem variables to turn on to support the requested variables in the pecan.xml tag } \author{ diff --git a/models/dvmdostem/man/vmap_reverse.Rd b/models/dvmdostem/man/vmap_reverse.Rd index f367dcf0ba3..1f5532fd865 100644 --- a/models/dvmdostem/man/vmap_reverse.Rd +++ b/models/dvmdostem/man/vmap_reverse.Rd @@ -4,7 +4,7 @@ \name{vmap_reverse} \alias{vmap_reverse} \title{Build a mapping from dvmdostem names to PEcAn names, units, etc. -The temunits should be (are) looked up from the dvmdostem output +The temunits should be (are) looked up from the dvmdostem output file's units attributes.} \format{ An object of class \code{list} of length 19. diff --git a/models/fates/man/model2netcdf.FATES.Rd b/models/fates/man/model2netcdf.FATES.Rd index 2fafb91db21..c427123291d 100644 --- a/models/fates/man/model2netcdf.FATES.Rd +++ b/models/fates/man/model2netcdf.FATES.Rd @@ -33,7 +33,6 @@ model2netcdf.FATES( Code to convert FATES netcdf output into into CF standard } \examples{ - \dontrun{ example.output <- system.file("case.clm2.h0.2004-01-01-00000.nc",package="PEcAn.FATES") model2netcdf.FATES(outdir="~/",sitelat, sitelon, start_date, end_date, vars_names, pfts) diff --git a/models/gday/man/met2model.GDAY.Rd b/models/gday/man/met2model.GDAY.Rd index 5a180d85eb5..4fc5e4ee45a 100644 --- a/models/gday/man/met2model.GDAY.Rd +++ b/models/gday/man/met2model.GDAY.Rd @@ -40,9 +40,9 @@ that will be inserted into database } \description{ Function to convert NetCDF met files in PEcAn-CF format into GDAY met driver files. -This function is an R wrapper to the python script "generate_forcing_data.py" -in the inst/ folder. The python script supports arguments to generate sub-daily (30 min) -weather data as well as soil temperature from 6 day running mean. These arguments are +This function is an R wrapper to the python script "generate_forcing_data.py" +in the inst/ folder. The python script supports arguments to generate sub-daily (30 min) +weather data as well as soil temperature from 6 day running mean. These arguments are hard-coded in this function to generate daily GDAY files without soil temperature. } \details{ diff --git a/models/maat/man/met2model.MAAT.Rd b/models/maat/man/met2model.MAAT.Rd index b6e4ce7f27e..bdb4be6937a 100644 --- a/models/maat/man/met2model.MAAT.Rd +++ b/models/maat/man/met2model.MAAT.Rd @@ -31,7 +31,7 @@ met2model.MAAT( \item{verbose}{should the function be very verbose} -\item{leap_year}{Enforce Leap-years? If set to TRUE, will require leap years to have 366 days. +\item{leap_year}{Enforce Leap-years? If set to TRUE, will require leap years to have 366 days. If set to false, will require all years to have 365 days. Default = TRUE.} \item{...}{additional arguments, currently ignored} diff --git a/models/sibcasa/man/sibcasa_output_vars.Rd b/models/sibcasa/man/sibcasa_output_vars.Rd index e85c2700a91..7748b619b1d 100644 --- a/models/sibcasa/man/sibcasa_output_vars.Rd +++ b/models/sibcasa/man/sibcasa_output_vars.Rd @@ -19,8 +19,8 @@ sibcasa_output_vars } \description{ TODO: Provide a complete description here of the dataset, -including its origin and purpose. + including its origin and purpose. The column descriptions below were written by someone looking at the file -with no insight into its usage + with no insight into its usage } \keyword{datasets}