From 598469727ecc6c1e7f329070522d07d62736b5df Mon Sep 17 00:00:00 2001 From: cooperl09 Date: Tue, 7 Nov 2017 16:10:41 -0800 Subject: [PATCH] Fixed minor typo in dbxrefs --- src/ontology/peco-edit.obo | 233 ++++++++++++++++++------------------- 1 file changed, 116 insertions(+), 117 deletions(-) diff --git a/src/ontology/peco-edit.obo b/src/ontology/peco-edit.obo index 13ef04b..f3f8654 100644 --- a/src/ontology/peco-edit.obo +++ b/src/ontology/peco-edit.obo @@ -1,7 +1,6 @@ format-version: 1.2 date: 12:10:2015 15:21 saved-by: cooperl -auto-generated-by: OBO-Edit 2.3.1 default-namespace: plant_experimental_conditions_ontology ontology: peco @@ -10,7 +9,7 @@ id: PECO:0001001 name: plant treatment alt_id: EO:0001001 def: "A plant experimental condition (PECO:0007359) or set of conditions describing the application of an abiotic (PECO:0007191) or biotic plant treatment (PECO:0007357) or the combinatorial application thereof." [PO:cooperl] -xref: PECO_GIT48 +xref: PECO_GIT:48 xref: OBO_SF2_PECO:48 is_a: PECO:0007359 ! plant experimental condition created_by: cooperl @@ -32,7 +31,7 @@ id: PECO:0001003 name: organic chemical treatment alt_id: EO:0001003 def: "A chemical treatment (PECO:0007189) involving the application of organic chemical(s)." [PO:cooperl] -xref: PECO_GIT55 +xref: PECO_GIT:55 xref: OBO_SF2_PECO:55 is_a: PECO:0007189 ! chemical treatment created_by: cooperl @@ -43,7 +42,7 @@ id: PECO:0001004 name: inorganic chemical treatment alt_id: EO:0001004 def: "A chemical treatment (PECO:0007189) involving the application of inorganic chemical(s)." [PO:cooperl] -xref: PECO_GIT51 +xref: PECO_GIT:51 xref: OBO_SF2_PECO:51 is_a: PECO:0007189 ! chemical treatment created_by: cooperl @@ -54,7 +53,7 @@ id: PECO:0001005 name: nickel treatment alt_id: EO:0001005 def: "A mineral treatment (PECO:0007044) involving exposure of plant to nickel (CHEBI:28112)." [CHEBI:28112, PO:cooperl] -xref: PECO_GIT6 +xref: PECO_GIT:6 xref: OBO_SF2_PECO:6 is_a: PECO:0007044 ! mineral treatment created_by: cooperl @@ -65,7 +64,7 @@ id: PECO:0001006 name: phosphate treatment alt_id: EO:0001006 def: "An inorganic anion treatment (PECO:0001009) involving the application of phosphate (CHEBI:18367)." [CHEBI:18367, PO:cooperl] -xref: PECO_GIT7 +xref: PECO_GIT:7 xref: OBO_SF2_PECO:7 is_a: PECO:0001009 ! inorganic anion treatment created_by: cooperl @@ -77,7 +76,7 @@ name: mineral salt treatment alt_id: EO:0001007 def: "A mineral treatment (PECO:0007044) involving exposure of the plant(s) to mineral salts (CHEBI:24866)." [PO:cooperl] comment: A salt (CHEBI:24866) is defined as an assembly of cations and anions. This is a genral term to include the salts of various minerals. -xref: PECO_GIT53 +xref: PECO_GIT:53 xref: OBO_SF2_PECO:53 is_a: PECO:0007044 ! mineral treatment created_by: cooperl @@ -88,7 +87,7 @@ id: PECO:0001008 name: sulfate treatment alt_id: EO:0001008 def: "An inorganic anion treatment (PECO:0001009) involving the application of sulfate (CHEBI:35175)." [CHEBI:35175, PO:cooperl] -xref: PECO_GIT8 +xref: PECO_GIT:8 xref: OBO_SF2_PECO:8 is_a: PECO:0001009 ! inorganic anion treatment created_by: cooperl @@ -100,7 +99,7 @@ name: inorganic anion treatment alt_id: EO:0001009 def: "An inorganic chemical treatment (PECO:0001004) involving the application of an anion or a mixture of anions (CHEBI:22563)." [CHEBI:22563, PO:cooperl] comment: An anion (CHEBI:22653) is defined as a monoatomic or polyatomic species having one or more elementary charges of the electron. -xref: PECO_GIT54 +xref: PECO_GIT:54 xref: OBO_SF2_PECO:54 is_a: PECO:0001004 ! inorganic chemical treatment created_by: cooperl @@ -112,7 +111,7 @@ name: carbohydrate treatment alt_id: EO:0001010 def: "An organic chemical treatment (PECO:0001003) involving the application of a carbohydrate (CHEBI:16646) or mixture of carbohydrates." [CHEBI:16646, PO:cooperl] comment: Carbohydrate (CHEBI:16646) is defined as the generic term 'carbohydrate' includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. -xref: PECO_GIT9 +xref: PECO_GIT:9 xref: OBO_SF2_PECO:9 is_a: PECO:0001003 ! organic chemical treatment created_by: moorel @@ -124,7 +123,7 @@ name: monosaccharide treatment alt_id: EO:0001011 def: "A carbohydrate treatment (PECO:0001010) involving the application of monosaccharide(s)(CHEBI:35381)." [CHEBI:35381, PO:cooperl] comment: Monosaccharides (CHEBI:35381) are defined as polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H-[CHOH]n-C(=O)[CHOH]m-H with three or more carbon atoms. The generic term 'monosaccharide' (as opposed to oligosaccharide or polysaccharide) denotes a single unit, without glycosidic connection to other such units. It includes aldoses, dialdoses, aldoketoses, ketoses and diketoses, as well as deoxy sugars, provided that the parent compound has a (potential) carbonyl group. -xref: PECO_GIT56 +xref: PECO_GIT:56 xref: OBO_SF2_PECO:56 is_a: PECO:0001010 ! carbohydrate treatment created_by: moorel @@ -136,7 +135,7 @@ name: hexose treatment alt_id: EO:0001012 def: "A monosaccharide treatment (PECO:0001011) involving the application of hexose (CHEBI:18133) sugar(s)." [CHEBI:18133, PO:cooperl] comment: Hexose (CHEBI:18133) is defined as any six-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldohexose) or a ketone group at position 2 (ketohexose). -xref: PECO_GIT57 +xref: PECO_GIT:57 xref: OBO_SF2_PECO:57 is_a: PECO:0001011 ! monosaccharide treatment created_by: moorel @@ -147,7 +146,7 @@ id: PECO:0001013 name: glucose treatment alt_id: EO:0001013 def: "A hexose treatment (PECO:0001012) involving the application of glucose (CHEBI:17234)." [CHEBI:17234, PO:cooperl] -xref: PECO_GIT10 +xref: PECO_GIT:10 xref: OBO_SF2_PECO:10 is_a: PECO:0001012 ! hexose treatment created_by: moorel @@ -159,7 +158,7 @@ name: disaccharide treatment alt_id: EO:0001014 def: "A carbohydrate treatment (PECO:0001010) involving the application of disaccharide(s)(CHEBI:36233)." [CHEBI:36233, PO:cooperl] comment: Disaccharide (CHEBI:36233) is defined as a compound in which two monosaccharides are joined by a glycosidic bond. -xref: PECO_GIT58 +xref: PECO_GIT:58 xref: OBO_SF2_PECO:58 is_a: PECO:0001010 ! carbohydrate treatment created_by: moorel @@ -171,7 +170,7 @@ name: sucrose treatment alt_id: EO:0001015 def: "A disaccharide treatment (PECO:0001014) involving the application of sucrose (CHEBI:17992)." [CHEBI:17992, PO:cooperl] comment: Sucrose (CHEBI:17992) is defined as a disaccharide formed by glucose and fructose units joined by an acetal oxygen bridge from hemiacetal of glucose to the hemiketal of the fructose. -xref: PECO_GIT11 +xref: PECO_GIT:11 xref: OBO_SF2_PECO:11 is_a: PECO:0001014 ! disaccharide treatment created_by: moorel @@ -191,7 +190,7 @@ id: PECO:0001017 name: ammonium treatment alt_id: EO:0001017 def: "An inorganic cation treatment (PECO:0001016) involving the application of ammonium (NH4+) (CHEBI:28938)." [CHEBI:28938, PO:cooperl] -xref: PECO_GIT5 +xref: PECO_GIT:5 xref: OBO_SF2_PECO:5 is_a: PECO:0001016 ! inorganic cation treatment created_by: cooperl @@ -202,7 +201,7 @@ id: PECO:0001018 name: cadmium treatment alt_id: EO:0001018 def: "A mineral treatment (PECO:0007044) involving exposure of plant to cadmium (CHEBI:22977)." [CHEBI:22977, PO:cooperl] -xref: PECO_GIT30 +xref: PECO_GIT:30 xref: OBO_SF2_PECO:30 is_a: PECO:0007044 ! mineral treatment created_by: cooperl @@ -222,7 +221,7 @@ id: PECO:0001020 name: carbon dioxide treatment alt_id: EO:0001020 def: "An inorganic gas treatment (PECO:0001055) that involves the application of carbon dioxide (CHEBI:16526)." [CHEBI:16526, PO:cooperl] -xref: PECO_GIT28 +xref: PECO_GIT:28 xref: OBO_SF2_PECO:28 is_a: PECO:0001055 ! inorganic gas treatment created_by: cooperl @@ -233,7 +232,7 @@ id: PECO:0001021 name: ozone treatment alt_id: EO:0001021 def: "An inorganic anion treatment (PECO:0001009) involving the application of ozone (CHEBI:29382)." [CHEBI:29382, PO:cooperl] -xref: PECO_GIT29 +xref: PECO_GIT:29 xref: OBO_SF2_PECO:29 is_a: PECO:0001009 ! inorganic anion treatment created_by: cooperl @@ -245,7 +244,7 @@ name: gamma radiation treatment alt_id: EO:0001022 def: "A radiation quality treatment (PECO:0007154) involving the exposure to gamma radiation." [PO:cooperl] synonym: "gamma rays" EXACT [] -xref: PECO_GIT41 +xref: PECO_GIT:41 xref: OBO_SF2_PECO:41 is_a: PECO:0007154 ! radiation quality treatment created_by: cooperl @@ -256,7 +255,7 @@ id: PECO:0001023 name: agar growth medium treatment alt_id: EO:0001023 def: "An in vitro solid growth medium (PECO:0007262) composed of agar." [PO:cooperl] -xref: PECO_GIT45 +xref: PECO_GIT:45 xref: OBO_SF2_PECO:45 is_a: PECO:0007262 ! in vitro solid growth medium treatment created_by: cooperl @@ -267,7 +266,7 @@ id: PECO:0001024 name: vertical agar growth medium treatment alt_id: EO:0001024 def: "An agar growth medium (PECO:0001023) involving use of solid growth media in a vertical orientation." [PO:cooperl] -xref: PECO_GIT46 +xref: PECO_GIT:46 xref: OBO_SF2_PECO:46 is_a: PECO:0001023 ! agar growth medium treatment created_by: cooperl @@ -278,7 +277,7 @@ id: PECO:0001025 name: urea nitrogen treatment alt_id: EO:0001025 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to urea (CHEBI:16199) as the primary or sole source of nitrogen." [POC:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -289,7 +288,7 @@ id: PECO:0001026 name: MTA nitrogen treatment alt_id: EO:0001026 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to 5'-S-methyl-5'-thioadenosine (MTA; CHEBI:17509) as the primary or sole source of nitrogen." [CHEBI:17509, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl creation_date: 2013-04-12T19:23:02Z @@ -299,7 +298,7 @@ id: PECO:0001027 name: alanine nitrogen treatment alt_id: EO:0001027 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to alanine (CHEBI:16449) as the primary or sole source of nitrogen." [CHEBI:16449, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -310,7 +309,7 @@ id: PECO:0001028 name: glutamate nitrogen treatment alt_id: EO:0001028 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to glutamate (CHEBI:29987) as the primary or sole source of nitrogen." [CHEBI:29987, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -321,7 +320,7 @@ id: PECO:0001029 name: arginine nitrogen treatment alt_id: EO:0001029 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to arginine (CHEBI:29016) as the primary or sole source of nitrogen." [CHEBI:29016, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -332,7 +331,7 @@ id: PECO:0001030 name: ornithine nitrogen treatment alt_id: EO:0001030 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to ornithine (CHEBI:18257) as the primary or sole source of nitrogen." [CHEBI:18257, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -343,7 +342,7 @@ id: PECO:0001031 name: glutamine nitrogen treatment alt_id: EO:0001031 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure of plant to glutamine (CHEBI:28300) as the primary or sole source of nitrogen." [CHEBI:28300, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007284 ! nitrogen macronutrient treatment created_by: cooperl @@ -364,7 +363,7 @@ name: parasitic wasp insect plant treatment alt_id: EO:0001033 def: "A Hymenoptera insect plant treatment (PECO:0001032) that involves exposure to parasitic wasps." [PO:cooperl] comment: Parasitic wasp (or parasitoid wasp) refers to a large evolutionary grade of hymenopteran superfamilies, mainly in the Apocrita (from wikipedia). -xref: PECO_GIT38 +xref: PECO_GIT:38 xref: OBO_SF2_PECO:38 is_a: PECO:0001032 ! Hymenoptera insect plant treatment created_by: cooperl @@ -375,7 +374,7 @@ id: PECO:0001034 name: Pseudomonas syringae plant treatment alt_id: EO:0001034 def: "A Pseudomonas plant treatment (PECO:0007144) involving the exposure to bacteria of the Pseudomonas syringae group." [NCBITaxon:136849, PO:cooperl] -xref: PECO_GIT40 +xref: PECO_GIT:40 xref: OBO_SF2_PECO:40 is_a: PECO:0007144 ! Pseudomonas plant treatment created_by: cooperl @@ -387,7 +386,7 @@ name: stratification treatment alt_id: EO:0001035 def: "A physical treatment (PECO:0007316) involving both low temperature and moist conditions to overcome seed dormancy." [PO:cooperl] comment: A stratification process is used to pretreat seeds to simulate natural winter conditions in order to overcome dormancy and allow germination. -xref: PECO_GIT47 +xref: PECO_GIT:47 xref: OBO_SF2_PECO:47 is_a: PECO:0007316 ! physical plant treatment created_by: cooperl @@ -398,7 +397,7 @@ id: PECO:0001036 name: chemical stress treatment alt_id: EO:0001036 def: "A chemical treatment (PECO:0007189) that induces stress." [PO:cooperl] -xref: PECO_GIT64 +xref: PECO_GIT:64 xref: OBO_SF2_PECO:64 is_a: PECO:0007189 ! chemical treatment created_by: moorel @@ -409,7 +408,7 @@ id: PECO:0001037 name: oxidative stress treatment alt_id: EO:0001037 def: "A chemical stress treatment (PECO:0001036) involving use of oxidative stress-inducing chemicals." [PO:cooperl] -xref: PECO_GIT32 +xref: PECO_GIT:32 xref: OBO_SF2_PECO:32 is_a: PECO:0001036 ! chemical stress treatment created_by: moorel @@ -420,7 +419,7 @@ id: PECO:0001038 name: osmotic stress treatment alt_id: EO:0001038 def: "A chemical stress treatment (PECO:0001036) involving use of osmotic stress-inducing chemicals." [PO:cooperl] -xref: PECO_GIT31 +xref: PECO_GIT:31 xref: OBO_SF2_PECO:31 is_a: PECO:0001036 ! chemical stress treatment created_by: moorel @@ -431,7 +430,7 @@ id: PECO:0001039 name: radiation mutagen treatment alt_id: EO:0001039 def: "A radiation treatment (PECO:0007151) involving exposure of plant to chemicals or radiation resulting in perturbations to the genome." [PO:cooperl] -xref: PECO_GIT42 +xref: PECO_GIT:42 xref: OBO_SF2_PECO:42 is_a: PECO:0007151 ! radiation treatment created_by: moorel @@ -442,7 +441,7 @@ id: PECO:0001040 name: light-induced photooxidative stress treatment alt_id: EO:0001040 def: "A light intensity treatment (PECO:0007224) involving use of light-dependent generations of reactive oxygen species." [PO:cooperl] -xref: PECO_GIT44 +xref: PECO_GIT:44 xref: OBO_SF2_PECO:44 is_a: PECO:0007224 ! light intensity treatment created_by: moorel @@ -453,7 +452,7 @@ id: PECO:0001041 name: limited zinc treatment alt_id: EO:0001041 def: "A zinc nutrient treatment (PECO:0007309) involving exposure to limiting amounts or absence of zinc (CHEBI:27363)." [CHEBI:27363, PO:cooperl] -xref: PECO_GIT23 +xref: PECO_GIT:23 xref: OBO_SF2_PECO:23 is_a: PECO:0007309 ! zinc nutrient treatment created_by: moorel @@ -464,7 +463,7 @@ id: PECO:0001042 name: limited boron treatment alt_id: EO:0001042 def: "A boron nutrient treatment (PECO:0007273) involving exposure to limiting amounts or absence of boron (CHEBI:27560)." [CHEBI:27560, PO:cooperl] -xref: PECO_GIT15 +xref: PECO_GIT:15 xref: OBO_SF2_PECO:15 is_a: PECO:0007273 ! boron nutrient treatment created_by: moorel @@ -475,7 +474,7 @@ id: PECO:0001043 name: limited glucose treatment alt_id: EO:0001043 def: "A glucose treatment (PECO:0001013) involving exposure to limiting amounts or the absence of glucose (CHEBI:17234)." [CHEBI:17234, PO:cooperl] -xref: PECO_GIT16 +xref: PECO_GIT:16 xref: OBO_SF2_PECO:16 is_a: PECO:0001013 ! glucose treatment created_by: moorel @@ -486,7 +485,7 @@ id: PECO:0001044 name: limited carbon treatment alt_id: EO:0001044 def: "A carbon nutrient treatment (PECO:0007303) involving exposure to limiting amounts or the absence of carbon (CHEBI:27594)." [CHEBI:27594, PO:cooperl] -xref: PECO_GIT13 +xref: PECO_GIT:13 xref: OBO_SF2_PECO:13 is_a: PECO:0007303 ! carbon nutrient treatment created_by: moorel @@ -497,7 +496,7 @@ id: PECO:0001045 name: limited sulfate treatment alt_id: EO:0001045 def: "A sulfate treatment (PECO:0001008) involving exposure to limiting amounts or the absence of sulfate (CHEBI:35175)." [CHEBI:35175, PO:cooperl] -xref: PECO_GIT27 +xref: PECO_GIT:27 xref: OBO_SF2_PECO:27 is_a: PECO:0001008 ! sulfate treatment created_by: moorel @@ -508,8 +507,8 @@ id: PECO:0001046 name: limited phosphate treatment alt_id: EO:0001046 def: "A phosphate treatment (PECO:0001006) involving exposure to limiting amounts or absence of phosphate (CHEBI:18367)." [CHEBI:18367, PO:cooperl] -xref: PECO_GIT20 -xref: PECO_GIT26 +xref: PECO_GIT:20 +xref: PECO_GIT:26 xref: OBO_SF2_PECO:20 xref: OBO_SF2_PECO:26 is_a: PECO:0001006 ! phosphate treatment @@ -521,7 +520,7 @@ id: PECO:0001047 name: limited iron treatment alt_id: EO:0001047 def: "An iron nutrient treatment (PECO:0007242) involving exposure to limiting amounts or the absence of iron (CHEBI:18248)." [CHEBI:18248, PO:cooperl] -xref: PECO_GIT14 +xref: PECO_GIT:14 xref: OBO_SF2_PECO:14 is_a: PECO:0007242 ! iron nutrient treatment created_by: moorel @@ -532,7 +531,7 @@ id: PECO:0001048 name: limited molybdenum treatment alt_id: EO:0001048 def: "A molybdenum nutrient treatment (PECO:0007253) involving exposure to limiting amounts or the absence of molybdenum (CHEBI:28685)." [CHEBI:28685, PO:cooperl] -xref: PECO_GIT18 +xref: PECO_GIT:18 xref: OBO_SF2_PECO:18 is_a: PECO:0007253 ! molybdenum nutrient treatment created_by: moorel @@ -543,7 +542,7 @@ id: PECO:0001049 name: limited magnesium treatment alt_id: EO:0001049 def: "A magnesium nutrient treatment (PECO:0007288) involving exposure to limiting amounts or the absence of magnesium (CHEBI:25107)." [CHEBI:25107, PO:cooperl] -xref: PECO_GIT17 +xref: PECO_GIT:17 xref: OBO_SF2_PECO:17 is_a: PECO:0007288 ! magnesium nutrient treatment created_by: moorel @@ -554,9 +553,9 @@ id: PECO:0001050 name: limited nitrogen treatment alt_id: EO:0001050 def: "A nitrogen macronutrient treatment (PECO:0007284) involving exposure to limiting amounts or the absence of nitrogen (CHEBI:25555)." [CHEBI:25555, PO:cooperl] -xref: PECO_GIT19 -xref: PECO_GIT2 -xref: PECO_GIT25 +xref: PECO_GIT:19 +xref: PECO_GIT:2 +xref: PECO_GIT:25 xref: OBO_SF2_PECO:19 xref: OBO_SF2_PECO:2 xref: OBO_SF2_PECO:25 @@ -569,7 +568,7 @@ id: PECO:0001051 name: limited potassium treatment alt_id: EO:0001051 def: "A potassium nutrient treatment (PECO:0007293) involving exposure to limiting amounts or the absence of potassium (CHEBI:26216)." [CHEBI:26216, PO:cooperl] -xref: PECO_GIT21 +xref: PECO_GIT:21 xref: OBO_SF2_PECO:21 is_a: PECO:0007293 ! potassium nutrient treatment created_by: moorel @@ -580,7 +579,7 @@ id: PECO:0001052 name: limited sulfur treatment alt_id: EO:0001052 def: "A sulfur nutrient treatment (PECO:0007295) involving exposure to limiting amounts or the absence of sulfur (CHEBI:26833)." [CHEBI:26833, PO:cooperl] -xref: PECO_GIT22 +xref: PECO_GIT:22 xref: OBO_SF2_PECO:22 is_a: PECO:0007295 ! sulfur nutrient treatment created_by: moorel @@ -591,7 +590,7 @@ id: PECO:0001053 name: limited manganese treatment alt_id: EO:0001053 def: "A manganese nutrient treatment (PECO:0007387) involving exposure to limiting amounts or the absence of manganese (CHEBI:18291)." [CHEBI:18291, PO:cooperl] -xref: PECO_GIT24 +xref: PECO_GIT:24 xref: OBO_SF2_PECO:24 is_a: PECO:0007387 ! manganese nutrient treatment created_by: moorel @@ -611,7 +610,7 @@ id: PECO:0001055 name: inorganic gas treatment alt_id: EO:0001055 def: "An inorganic chemical treatment (PECO:0001004) involving the application of a gas or mixture of gases." [PO:cooperl] -xref: PECO_GIT66 +xref: PECO_GIT:66 xref: OBO_SF2_PECO:66 is_a: PECO:0001004 ! inorganic chemical treatment created_by: moorel @@ -622,7 +621,7 @@ id: PECO:0001056 name: elevated carbon dioxide treatment alt_id: EO:0001056 def: "A carbon dioxide treatment (PECO:0001020) involving an increased concentration of carbon dioxide (CHEBI:16526)." [CHEBI:16526, POC:cooperl] -xref: PECO_GIT1 +xref: PECO_GIT:1 xref: OBO_SF2_PECO:1 is_a: PECO:0001020 ! carbon dioxide treatment created_by: moorel @@ -633,7 +632,7 @@ id: PECO:0001057 name: abnormal stratification treatment alt_id: EO:0001057 def: "A stratification treatment (PECO:0001035) involving the absence of, or non-standard exposure to temperature or moisture conditions utilized in the breaking of seed dormancy." [POC:cooperl] -xref: PECO_GIT47 +xref: PECO_GIT:47 xref: OBO_SF2_PECO:47 is_a: PECO:0001035 ! stratification treatment created_by: cooperl @@ -644,7 +643,7 @@ id: PECO:0001058 name: Glomeromycota treatment alt_id: EO:0001058 def: "A fungal plant treatment (PECO:0007233) involving the exposure of plant to the pathogen belonging to Glomeromyetes class." [POC:laura_moore] -xref: PECO_GIT68 +xref: PECO_GIT:68 xref: NCBI_Taxon_ID:214504 xref: OBO_SF2_PECO:68 is_a: PECO:0007233 ! fungal plant treatment @@ -656,7 +655,7 @@ id: PECO:0001059 name: arbuscular mycorrhizal fungal treatment alt_id: EO:0001059 def: "A Glomeromycota treatment (PECO:0001058) involving the exposure of compatible plants to mutualistic arbuscular mycorrhizal fungi." [POC:laura_moore] -xref: PECO_GIT68 +xref: PECO_GIT:68 xref: OBO_SF2_PECO:68 is_a: PECO:0001058 ! Glomeromycota treatment created_by: moorel @@ -668,7 +667,7 @@ name: sodium hydroxide treatment alt_id: EO:0001060 def: "An inorganic anion treatment (PECO:0001009) involving the application of sodium hydroxide (CHEBI:32145)." [PO:cooperl] synonym: "NaOH treatment" EXACT [] -xref: PECO_GIT87 +xref: PECO_GIT:87 xref: OBO_SF2_PECO:88 is_a: PECO:0001009 ! inorganic anion treatment created_by: cooperl @@ -691,7 +690,7 @@ name: control treatment alt_id: EO:0001062 def: "A plant treatment (PECO:0001001) used as a reference to compare the effects of one or more treatment factors in a study." [PECO:cooperl] comment: A control treatment may involve the application of inert factors such as water in an experiment, or no treatment at all. -xref: PECO_GIT88 +xref: PECO_GIT:88 is_a: PECO:0001001 ! plant treatment created_by: cooperl creation_date: 2015-10-12T14:58:32Z @@ -702,7 +701,7 @@ name: paper towel growth medium alt_id: EO:0001063 def: "An in vitro solid growth medium (PECO:0007262) composed of paper towels." [PECO:Laurel_Cooper, PMID:28282385] synonym: "ragdoll method (exact)" EXACT [] -xref: PECO_GIT120 +xref: PECO_GIT:120 is_a: PECO:0007262 ! in vitro solid growth medium treatment creation_date: 2017-08-08 @@ -887,7 +886,7 @@ id: PECO:0007023 name: gaseous treatment alt_id: EO:0007023 def: "A physical plant treatment (PECO:0007316) involving the application of a gas or a combination of gasses." [GR:pj, PO:cooperl] -xref: PECO_GIT85 +xref: PECO_GIT:85 xref: OBO_SF2_PECO:86 is_a: PECO:0007316 ! physical plant treatment @@ -918,7 +917,7 @@ id: PECO:0007027 name: seasonal environment treatment alt_id: EO:0007027 def: "A plant treatment (PECO:0001001) involving an exposure to a given conditions of regional seasons." [GR:pj, PO:cooperl] -xref: PECO_GIT83 +xref: PECO_GIT:83 xref: OBO_SF2_PECO:84 is_a: PECO:0001001 ! plant treatment @@ -1016,7 +1015,7 @@ id: PECO:0007041 name: antibiotic treatment alt_id: EO:0007041 def: "A chemical treatment (PECO:0007189) involving the use of antibiotic for selection purposes." [GR:pj, TO:moorel] -xref: PECO_GIT69 +xref: PECO_GIT:69 xref: OBO_SF2_PECO:70 is_a: PECO:0007189 ! chemical treatment @@ -1032,7 +1031,7 @@ id: PECO:0007044 name: mineral treatment alt_id: EO:0007044 def: "An inorganic chemical treatment (PECO:0001004) involving the application of a mineral or a combination of minerals." [GR:pj, PO:cooperl] -xref: PECO_GIT52 +xref: PECO_GIT:52 xref: OBO_SF2_PECO:52 is_a: PECO:0001004 ! inorganic chemical treatment @@ -1065,7 +1064,7 @@ alt_id: EO:0007048 def: "A salt treatment (PECO:0007185) involving the use of sodium chloride salt as supplement to liquid and soil growth media to study various types of responses on its application." [GR:pj] synonym: "NaCl treatment" RELATED [] xref: CHEBI:26710 -xref: PECO_GIT76 +xref: PECO_GIT:76 xref: OBO_SF2_PECO:77 is_a: PECO:0007185 ! salt treatment @@ -1180,7 +1179,7 @@ synonym: "3-(3,4-dichloro-phenyl)-1,1-dimethylurea" RELATED [] synonym: "dichlorophenyldimethyl urea" RELATED [] synonym: "diuron" RELATED [] xref: CHEBI:116509 -xref: PECO_GIT74 +xref: PECO_GIT:74 xref: OBO_SF2_PECO:75 is_a: PECO:0007183 ! herbicide treatment @@ -1189,7 +1188,7 @@ id: PECO:0007064 name: ecological environment treatment alt_id: EO:0007064 def: "A plant treatment (PECO:0001001) involving exposure to the various factors that comprise a geographical/regional location." [GR:pj, PO:cooperl] -xref: PECO_GIT79 +xref: PECO_GIT:79 xref: OBO_SF2_PECO:80 is_a: PECO:0001001 ! plant treatment @@ -1210,7 +1209,7 @@ def: "A growth hormone treatment (PECO:0007165) involving the use of cytokinin ( synonym: "6-benzylaminopurine" RELATED [] synonym: "N-benzyl-adenine" RELATED [] synonym: "verdan senescence" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -1227,7 +1226,7 @@ id: PECO:0007068 name: ethylene treatment alt_id: EO:0007068 def: "A growth hormone treatment (PECO:0007165) involving the use of ethylene (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0001019 ! organic gas treatment is_a: PECO:0007165 ! growth hormone treatment @@ -1238,7 +1237,7 @@ name: gibberellic acid treatment alt_id: EO:0007069 def: "A growth hormone treatment (PECO:0007165) involving the use of GA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] synonym: "GA regimen" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -1248,7 +1247,7 @@ name: indole acetic acid treatment alt_id: EO:0007070 def: "An auxin treatment (PECO:0007074) involving the use of IAA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] synonym: "IAA regimen" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007074 ! auxin treatment @@ -1281,7 +1280,7 @@ id: PECO:0007074 name: auxin treatment alt_id: EO:0007074 def: "A growth hormone treatment (PECO:0007165) involving the use of auxin (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -1326,7 +1325,7 @@ name: jasmonic acid treatment alt_id: EO:0007080 def: "A growth hormone treatment (PECO:0007165) involving the use of JA (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] synonym: "JA regimen" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -1506,7 +1505,7 @@ name: abscisic acid treatment alt_id: EO:0007105 def: "A growth hormone treatment (PECO:0007165) involving the use of abscisic acid (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] synonym: "ABA regimen" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -1831,7 +1830,7 @@ id: PECO:0007147 name: plant growth medium treatment alt_id: EO:0007147 def: "An abiotic plant treatment (PECO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples." [GR:pj, PO:cooperl] -xref: PECO_GIT81 +xref: PECO_GIT:81 xref: OBO_SF2_PECO:82 is_a: PECO:0007191 ! abiotic plant treatment @@ -1848,7 +1847,7 @@ id: PECO:0007149 name: chemical mutagen treatment alt_id: EO:0007149 def: "A chemical treatment (PECO:0007189) involving use of mutagen for the mutagenesis process." [GR:pj, PO:cooperl] -xref: PECO_GIT64 +xref: PECO_GIT:64 xref: OBO_SF2_PECO:64 is_a: PECO:0007189 ! chemical treatment @@ -1962,7 +1961,7 @@ id: PECO:0007165 name: growth hormone treatment alt_id: EO:0007165 def: "A chemical treatment (PECO:0007189) involving the use of growth hormones to study various types of responses on their extrinsic and/or intrinsic application." [GR:pj] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007189 ! chemical treatment @@ -1979,7 +1978,7 @@ name: pesticide treatment alt_id: EO:0007167 def: "A chemical treatment (PECO:0007189) involving the application of a pesticide; a chemical entity or mixture of chemical entities." [GR:pj] xref: CHEBI:25944 -xref: PECO_GIT73 +xref: PECO_GIT:73 xref: OBO_SF2_PECO:74 is_a: PECO:0007189 ! chemical treatment @@ -1990,7 +1989,7 @@ alt_id: EO:0007168 def: "An antibiotic treatment (PECO:0007041) involving use of hygromycin B antibiotic for selection purposes." [GR:pj, TO:moorel] synonym: "Antibiotic A-396-II" RELATED [] synonym: "hygromycin B regimen" RELATED [] -xref: PECO_GIT69 +xref: PECO_GIT:69 xref: OBO_SF2_PECO:70 is_a: PECO:0007041 ! antibiotic treatment @@ -2073,7 +2072,7 @@ synonym: "U-5043" RELATED [CAS:94-75-7] synonym: "Weed Tox" RELATED [CAS:94-75-7] synonym: "Weedar 64A" RELATED [CAS:94-75-7] synonym: "Weedone-2,4-DP" RELATED [CAS:94-75-7] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007074 ! auxin treatment is_a: PECO:0007183 ! herbicide treatment @@ -2099,7 +2098,7 @@ name: herbicide treatment alt_id: EO:0007183 def: "A pesticide treatment (PECO:0007167) involving the application of a herbicide; a chemical entity or mixture of chemical entities." [GR:pj] xref: CHEBI:24527 -xref: PECO_GIT73 +xref: PECO_GIT:73 xref: OBO_SF2_PECO:74 is_a: PECO:0007167 ! pesticide treatment @@ -2117,7 +2116,7 @@ alt_id: EO:0007185 def: "A chemical treatment (PECO:0007189) involving use of salts as supplement to liquid and soil growth media to study various types of responses on their application." [GR:pj] comment: This treatment may be used to simulate the growth conditions of sea coast regions and saline/sodic soils. xref: CHEBI:24866 -xref: PECO_GIT76 +xref: PECO_GIT:76 xref: OBO_SF2_PECO:77 is_a: PECO:0007189 ! chemical treatment @@ -2134,7 +2133,7 @@ name: salicylic acid treatment alt_id: EO:0007187 def: "An organic chemical treatment (PECO:0001003) involving the application of salicylic acid (CHEBI:16914)." [CHEBI:16914, GR:pj, PO:cooperl] comment: An organic chemical treatment (PECO:0001003) invloving the application of salicylic acid (CHEBI:16914). -xref: PECO_GIT63 +xref: PECO_GIT:63 xref: OBO_SF2_PECO:63 is_a: PECO:0001003 ! organic chemical treatment @@ -2152,7 +2151,7 @@ alt_id: EO:0007189 alt_id: EO:0007042 def: "An abiotic plant treatment (PECO:0007191) involving the application of chemical(s)." [GR:pj, PO:cooperl] synonym: "other chemical regimen" RELATED [] -xref: PECO_GIT50 +xref: PECO_GIT:50 xref: OBO_SF2_PECO:50 is_a: PECO:0007191 ! abiotic plant treatment @@ -2168,7 +2167,7 @@ id: PECO:0007191 name: abiotic plant treatment alt_id: EO:0007191 def: "A plant treatment (PECO:0001001) involving the application of chemical or non-biological factors." [GR:pj, PO:cooperl] -xref: PECO_GIT49 +xref: PECO_GIT:49 xref: OBO_SF2_PECO:49 is_a: PECO:0001001 ! plant treatment @@ -2230,7 +2229,7 @@ id: PECO:0007198 name: water environment treatment alt_id: EO:0007198 def: "A physical plant treatment (PECO:0007316) involving an exposure of varying amounts of water and watering frequencies, which may depend on regional environment." [GR:pj, PO:cooperl] -xref: PECO_GIT86 +xref: PECO_GIT:86 xref: OBO_SF2_PECO:87 is_a: PECO:0007316 ! physical plant treatment @@ -2270,7 +2269,7 @@ alt_id: EO:0007204 def: "An auxin treatment (PECO:0007074) involving use of 1-naphthaleneacetic acid growth hormone/herbicide to study various types of responses on its extrinsic and/or intrinsic application." [CAS:[68-87-3\], GR:pj] synonym: "NAA" RELATED [] synonym: "Naphthylacetic acid" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007074 ! auxin treatment @@ -2408,7 +2407,7 @@ alt_id: EO:0007223 def: "A cadmium treatment (PECO:0001018) involving use of CdCl2 (CHEBI:35456)." [CHEBI:35456, GR:pj, PO:cooperl] comment: Can be used to assess plant response to cadmium, a heavy metal. synonym: "CdCl2" RELATED [] -xref: PECO_GIT60 +xref: PECO_GIT:60 xref: OBO_SF2_PECO:60 is_a: PECO:0001018 ! cadmium treatment @@ -2474,7 +2473,7 @@ id: PECO:0007231 name: study type alt_id: EO:0007231 def: "A plant experimental condition (PECO:0007359) or set of conditions describing what kind of plant growth facility was used for the experiment." [GR:pj, PO:cooperl] -xref: PECO_GIT81 +xref: PECO_GIT:81 xref: OBO_SF2_PECO:82 is_a: PECO:0007359 ! plant experimental condition @@ -2553,7 +2552,7 @@ name: plant nutrient treatment alt_id: EO:0007241 def: "A plant chemical treatment (PECO:0007189) involving a plant nutrient or a combination of plant nutrients." [GR:pj, PO:cooperl] synonym: "fertilizer regimen" BROAD [] -xref: PECO_GIT84 +xref: PECO_GIT:84 xref: OBO_SF2_PECO:85 is_a: PECO:0007189 ! chemical treatment @@ -2716,7 +2715,7 @@ id: PECO:0007262 name: in vitro solid growth medium treatment alt_id: EO:0007262 def: "An in vitro growth medium (PECO:0007266) involving use of a solid growth medium as a substrate." [GR:pj, PO:cooperl] -xref: PECO_GIT65 +xref: PECO_GIT:65 xref: OBO_SF2_PECO:65 is_a: PECO:0007266 ! in vitro growth medium treatment @@ -2745,7 +2744,7 @@ id: PECO:0007265 name: in vitro liquid growth medium treatment alt_id: EO:0007265 def: "An in vitro growth medium (PECO:0007265) involving use of liquid culture media as a substrate." [GR:pj, PO:cooperl] -xref: PECO_GIT65 +xref: PECO_GIT:65 xref: OBO_SF2_PECO:65 is_a: PECO:0007266 ! in vitro growth medium treatment @@ -2754,7 +2753,7 @@ id: PECO:0007266 name: in vitro growth medium treatment alt_id: EO:0007266 def: "A growth medium environment (PECO:0007147) for in vitro culture, involving use of a solid or liquid substrate and which may include nutrients and other amendments." [GR:pj, PO:cooperl] -xref: PECO_GIT65 +xref: PECO_GIT:65 xref: OBO_SF2_PECO:65 is_a: PECO:0007147 ! plant growth medium treatment @@ -2764,7 +2763,7 @@ name: benzothiadiazole treatment alt_id: EO:0007267 def: "A fungicide treatment (PECO:0007268) involving use of benzothiadiazole to study various types of responses on its application." [GR:pj] xref: CHEBI:48864 -xref: PECO_GIT75 +xref: PECO_GIT:75 xref: OBO_SF2_PECO:76 is_a: PECO:0007268 ! fungicide treatment @@ -2774,7 +2773,7 @@ name: fungicide treatment alt_id: EO:0007268 def: "A pesticide treatment (PECO:0007167) involving the application of a fungicide; a chemical entity or mixture of chemical entities." [GR:pj] xref: CHEBI:24127 -xref: PECO_GIT73 +xref: PECO_GIT:73 xref: OBO_SF2_PECO:74 is_a: PECO:0007167 ! pesticide treatment @@ -2899,7 +2898,7 @@ id: PECO:0007284 name: nitrogen macronutrient treatment alt_id: EO:0007284 def: "A primary plant macronutrient treatment (PECO:0007045) involving the application of nitrogen." [GR:pj, PO:cooperl] -xref: PECO_GIT3 +xref: PECO_GIT:3 xref: OBO_SF2_PECO:3 is_a: PECO:0007045 ! primary plant macronutrient treatment @@ -2928,7 +2927,7 @@ def: "An herbicide treatment (PECO:0007183) involving the use of dibromothymoqui comment: DBMIB blocks the oxidation of plastoquinol in the photosynthetic light reaction and keeps the plastoquinone pool reduced. synonym: "2,5-dibromo -6-isopropyl-3-methyl-1,4-benzoquinone" RELATED [] xref: CHEBI:19371 -xref: PECO_GIT74 +xref: PECO_GIT:74 xref: OBO_SF2_PECO:75 is_a: PECO:0007183 ! herbicide treatment @@ -2937,7 +2936,7 @@ id: PECO:0007288 name: magnesium nutrient treatment alt_id: EO:0007288 def: "The treatment involving exposure of plant to macronutrient magnesium as supplement to study various types of responses." [GR:pj] -xref: PECO_GIT17 +xref: PECO_GIT:17 xref: OBO_SF2_PECO:17 is_a: PECO:0007046 ! secondary macronutrient treatment @@ -2954,7 +2953,7 @@ id: PECO:0007290 name: kinetin treatment alt_id: EO:0007290 def: "A cytokinin treatment (PECO:0007066) involving use of kinetin, a cytokinin homolog to study various types of responses on its extrinsic and/or intrinsic application." [GR:pj] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007066 ! cytokinin treatment @@ -2970,7 +2969,7 @@ synonym: "Benzylaminopurine" RELATED [] synonym: "N-(Phenylmethyl)-1H-purin-6-amine" RELATED [] synonym: "N-benzyl-adenine" RELATED [] synonym: "verdan senescence inhibitor" RELATED [] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007066 ! cytokinin treatment @@ -2982,7 +2981,7 @@ def: "An herbicide treatment (PECO:0007183) involving the use of ethylphosphine synonym: "carbonyl cyanide phenylhydrazone" RELATED [] synonym: "carbonylcyanide-m-chlorophenylhydrazone" RELATED [] xref: CHEBI:35889 -xref: PECO_GIT74 +xref: PECO_GIT:74 xref: OBO_SF2_PECO:75 is_a: PECO:0007183 ! herbicide treatment @@ -3158,7 +3157,7 @@ id: PECO:0007316 name: physical plant treatment alt_id: EO:0007316 def: "An abiotic plant treatment (PECO:0007191) involving the application of a physical factor such as temperature, moisture, gravity, wind, radiation, etc. or a combination thereof." [PO:cooperl] -xref: PECO_GIT77 +xref: PECO_GIT:77 xref: OBO_SF2_PECO:78 is_a: PECO:0007191 ! abiotic plant treatment @@ -3481,7 +3480,7 @@ id: PECO:0007357 name: biotic plant treatment alt_id: EO:0007357 def: "A plant treatment (PECO:0001001) involving the application of a biotic or biological factor such as a microbe, insect, animal, or plant or a combination thereof." [GR:pj, PO:cooperl] -xref: PECO_GIT78 +xref: PECO_GIT:78 xref: OBO_SF2_PECO:79 is_a: PECO:0001001 ! plant treatment @@ -3501,7 +3500,7 @@ def: "A plant treatment (PECO:0001001) and/or study type (PECO:0007231) applied comment: The Plant Experimental Condition Ontology describes the treatments, growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in vitro plant structures (PO:0000004). The broadest classes are the plant study types (PECO:0007231), where the terms describe the type of growth facility used in an experiment. Each study type such as field study (PECO:0007256), growth chamber study (PECO:0007269), greenhouse study (PECO:0007248), or laboratory study (PECO:0007255) will also involve different growing conditions, and may also include specific biotic (PECO:0007357) and/or abiotic (PECO:0007191) plant treatments. A plant treatment (PECO:0001001) may be a component of a plant experimental condition (PECO:0007359), and the plant study type (PECO:0007231). synonym: "plant treatment ontology" RELATED [] synonym: "treatment ontology" RELATED [] -xref: PECO_GIT4 +xref: PECO_GIT:4 xref: OBO_SF2_PECO:4 [Term] @@ -3841,7 +3840,7 @@ id: PECO:0007402 name: fungal elicitor treatment alt_id: EO:0007402 def: "A chemical treatment (PECO:0007189) that involves the use of a fungal elicitor to study various types of plant responses." [TO:moorel] -xref: PECO_GIT70 +xref: PECO_GIT:70 xref: OBO_SF2_PECO:71 is_a: PECO:0007189 ! chemical treatment @@ -3851,7 +3850,7 @@ name: unknown treatment alt_id: EO:0007403 def: "A plant treatment (PECO:0001001) where there is a lack of information describing the experimental conditions." [PO:cooperl] comment: In some cases, only the study type (PECO:0007231) is known, without any additional information about the treatments. -xref: PECO_GIT82 +xref: PECO_GIT:82 xref: OBO_SF2_PECO:83 is_a: PECO:0001001 ! plant treatment @@ -3878,7 +3877,7 @@ id: PECO:0007407 name: methyl jasmonate treatment alt_id: EO:0007407 def: "An organic chemical treatment (PECO:0001003) involving the application of methyl jasmonate (MeJa; CHEBI:15929)." [CHEBI:15929, PO:Cooperl] -xref: PECO_GIT62 +xref: PECO_GIT:62 xref: OBO_SF2_PECO:62 is_a: PECO:0001003 ! organic chemical treatment @@ -3887,7 +3886,7 @@ id: PECO:0007408 name: 5-methyltryptophan treatment alt_id: EO:0007408 def: "An organic chemical treatment (PECO:0001003) involving the application of the tryptophan (Trp) analog 5-methyltryptophan (5MT; CHEBI: 52446)." [CHEBI:52446, PO:cooperl] -xref: PECO_GIT61 +xref: PECO_GIT:61 xref: OBO_SF2_PECO:61 is_a: PECO:0001003 ! organic chemical treatment @@ -3896,7 +3895,7 @@ id: PECO:0007409 name: brassinosteroid treatment alt_id: EO:0007409 def: "A growth hormone treatment (PECO:0007165) involving the use of brassinosteroid (or its homolog) growth hormone to study various types of responses on its extrinsic and/or intrinsic application." [TO:moorel] -xref: PECO_GIT71 +xref: PECO_GIT:71 xref: OBO_SF2_PECO:72 is_a: PECO:0007165 ! growth hormone treatment @@ -3905,7 +3904,7 @@ id: PECO:0007410 name: cerebroside elicitor treatment alt_id: EO:0007410 def: "A fungal elicitor treatment (PECO:0007402) that involves the use of a cerebroside elicitor to study various types of plant responses." [TO:moorel] -xref: PECO_GIT70 +xref: PECO_GIT:70 xref: OBO_SF2_PECO:71 is_a: PECO:0007402 ! fungal elicitor treatment @@ -3942,7 +3941,7 @@ id: PECO:0007414 name: peroxide treatment alt_id: EO:0007414 def: "A chemical treatment (PECO:0007189) involving exposure of plant to a peroxide to study various types of oxidative stress responses." [GR:pj] -xref: PECO_GIT72 +xref: PECO_GIT:72 xref: OBO_SF2_PECO:73 is_a: PECO:0007189 ! chemical treatment @@ -3951,7 +3950,7 @@ id: PECO:0007415 name: hydrogen peroxide treatment alt_id: EO:0007415 def: "A peroxide treatment (PECO:0007414) involving exposure of plant to H2O2 to study various types of oxidative stress responses." [GR:pj] -xref: PECO_GIT72 +xref: PECO_GIT:72 xref: OBO_SF2_PECO:73 is_a: PECO:0007414 ! peroxide treatment @@ -4097,7 +4096,7 @@ id: PECO:0007521 name: actinomycin D treatment alt_id: EO:0007521 def: "An antibiotic treatment (PECO:0007041) involving use of actinomycin D for mutagenesis process." [CAS:[50-76-0\], GR:pj, TO:moorel] -xref: PECO_GIT69 +xref: PECO_GIT:69 xref: OBO_SF2_PECO:70 is_a: PECO:0007041 ! antibiotic treatment is_a: PECO:0007149 ! chemical mutagen treatment @@ -4329,7 +4328,7 @@ id: PECO:0007551 name: mitomycin C treatment alt_id: EO:0007551 def: "An antibiotic treatment (PECO:0007551) involving use of mitomycin C for mutagenesis process." [CAS:[50-07-7\], GR:pj, TO:moorel] -xref: PECO_GIT69 +xref: PECO_GIT:69 xref: OBO_SF2_PECO:70 is_a: PECO:0007041 ! antibiotic treatment is_a: PECO:0007149 ! chemical mutagen treatment @@ -4657,7 +4656,7 @@ name: insecticide treatment alt_id: EO:0007632 def: "A pesticide treatment (PECO:0007167) involving the application of an insecticide; a chemical entity or mixture of chemical entities." [GR:pj] xref: CHEBI:24852 -xref: PECO_GIT73 +xref: PECO_GIT:73 xref: OBO_SF2_PECO:74 is_a: PECO:0007167 ! pesticide treatment @@ -4667,7 +4666,7 @@ name: imidazolinone treatment alt_id: EO:0007633 def: "An herbicide treatment (PECO:0007183) involving the use of an imidazolinone herbicide." [TO:moorel, web:http\://corn.agronomy.wisc.edu/AAdvice/1994/A001.html] comment: This type of herbicides are taken up by plant root and leaf tissue and transported to the meristems via both phloem and xylem. The herbicide stops the activity of the enzyme, acetolactate synthase (ALS), which is involved in branch chain amino acid (valine, leucine and isoleucine) synthesis. -xref: PECO_GIT74 +xref: PECO_GIT:74 xref: OBO_SF2_PECO:75 is_a: PECO:0007183 ! herbicide treatment