From 6991f5f1fbf2720fee0dd4119d55dec279dac95e Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 14:29:33 +0800
Subject: [PATCH 01/24] Pin scipy dependency version

---
 .github/workflows/python-publish.yml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
index 32e0236e..339052eb 100644
--- a/.github/workflows/python-publish.yml
+++ b/.github/workflows/python-publish.yml
@@ -21,11 +21,11 @@ jobs:
       matrix:
         os: [windows-latest, ubuntu-latest, macos-13, macos-14]
         versions:
-          - { python: "3.8", numpy: 1.22.4 }
-          - { python: "3.9", numpy: 1.22.4 }
-          - { python: "3.10", numpy: 1.22.4 }
-          - { python: "3.11", numpy: 1.24.3 }
-          - { python: "3.12", numpy: 1.26.4 }
+          - { python: "3.8", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 }
+          - { python: "3.12", numpy: 1.26.4, scipy: 1.13.1 }
 
     steps:
     - uses: actions/checkout@v4
@@ -60,15 +60,15 @@ jobs:
     - name: Upgrade pip wheel setuptools
       run: pip install wheel setuptools pip --upgrade
 
-    - name: Install numpy ${{ matrix.versions.numpy }}
-      run: pip install numpy==${{ matrix.versions.numpy }}
+    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
+      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
     
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
 
     - name: Install other dependencies
       run: |
-        pip install scipy Cython wheel
+        pip install Cython wheel
     
     - name: Build wheels
       run: python${{ matrix.versions.python }} setup.py bdist_wheel
@@ -105,12 +105,12 @@ jobs:
 
     - name: Install numpy
       run: |
-        python -m pip install numpy==1.22.4
+        python -m pip install numpy==1.22.4 scipy==1.13.1
         python -c "import numpy; print(numpy.__version__)"
 
     - name: Install other dependencies
       run: |
-        python -m pip install scipy Cython wheel
+        python -m pip install Cython wheel
 
     - name: Build source tar file
       run: python setup.py sdist

From 7b3ea14bf7da10a41ebe6a13f84ec3c2a99f23e8 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 14:54:34 +0800
Subject: [PATCH 02/24] display numpy version after installing other
 dependencies

---
 .github/workflows/python-publish.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
index 339052eb..ddda3746 100644
--- a/.github/workflows/python-publish.yml
+++ b/.github/workflows/python-publish.yml
@@ -63,13 +63,13 @@ jobs:
     - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
     
-    - name: Display numpy version
-      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
-
     - name: Install other dependencies
       run: |
         pip install Cython wheel
     
+    - name: Display numpy version
+      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
+
     - name: Build wheels
       run: python${{ matrix.versions.python }} setup.py bdist_wheel
         

From b7b0e7b44664037554c204df812f689c585b33e8 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 14:57:55 +0800
Subject: [PATCH 03/24] Update pip install function

---
 .github/workflows/python-publish.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
index ddda3746..b022f52a 100644
--- a/.github/workflows/python-publish.yml
+++ b/.github/workflows/python-publish.yml
@@ -58,7 +58,7 @@ jobs:
         pip --version
 
     - name: Upgrade pip wheel setuptools
-      run: pip install wheel setuptools pip --upgrade
+      run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
 
     - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}

From 483b9c6440236c44ee236dbe8dacefa10750cd8f Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 16:34:28 +0800
Subject: [PATCH 04/24] Pin scipy version for python-package

---
 .github/workflows/python-package.yml | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 9352892d..b28aad59 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -19,11 +19,11 @@ jobs:
         os: [windows-latest, ubuntu-latest, macos-13, macos-14]
         # python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         versions:
-          - { python: "3.8", numpy: 1.22.4 }
-          - { python: "3.9", numpy: 1.22.4 }
-          - { python: "3.10", numpy: 1.22.4 }
-          - { python: "3.11", numpy: 1.24.3 }
-          - { python: "3.12", numpy: 1.26.4 }
+          - { python: "3.8", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 }
+          - { python: "3.12", numpy: 1.26.4, scipy: 1.13.1 }
         
     steps:
     - name: Get number of CPU cores
@@ -60,17 +60,17 @@ jobs:
         pip --version
 
     - name: Upgrade pip wheel setuptools
-      run: pip install wheel setuptools pip --upgrade
+      run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
 
-    - name: Install numpy ${{ matrix.versions.numpy }}
-      run: pip install numpy==${{ matrix.versions.numpy }}
+    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
+      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
     
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
 
     - name: Install other dependencies
       run: |
-        pip install scipy Cython pytest pytest-cov flake8
+        pip install Cython pytest pytest-cov flake8
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         pip install -e .[tests]
 

From 5f40c95771273cd3c93b3c217d55230fbc69e7e1 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 17:11:05 +0800
Subject: [PATCH 05/24] Update package steps and pytest step

---
 .github/workflows/python-package.yml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index b28aad59..d278687e 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -64,16 +64,16 @@ jobs:
 
     - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
-    
-    - name: Display numpy version
-      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
-
+  
     - name: Install other dependencies
       run: |
         pip install Cython pytest pytest-cov flake8
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         pip install -e .[tests]
 
+    - name: Display numpy version
+      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
+
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -83,4 +83,4 @@ jobs:
     
     - name: Test with pytest
       run: |
-        pytest --cov=cornac
+        python${{ matrix.versions.python }} -m pytest --cov=cornac

From db345818400a89bc8e101d85e965341c0aff0f40 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 17:34:30 +0800
Subject: [PATCH 06/24] Reordered numpy scipy installation step

---
 .github/workflows/python-package.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index d278687e..f059688e 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -61,9 +61,6 @@ jobs:
 
     - name: Upgrade pip wheel setuptools
       run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
-
-    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
-      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
   
     - name: Install other dependencies
       run: |
@@ -71,6 +68,9 @@ jobs:
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         pip install -e .[tests]
 
+    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
+      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
 

From 423e0cff87268421eb147410eb41fd68d366045d Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 17:38:27 +0800
Subject: [PATCH 07/24] add numpy scipy to install step

---
 .github/workflows/python-package.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index f059688e..f7f02769 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -64,11 +64,11 @@ jobs:
   
     - name: Install other dependencies
       run: |
-        pip install Cython pytest pytest-cov flake8
+        pip install numpy scipy Cython pytest pytest-cov flake8
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         pip install -e .[tests]
 
-    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
+    - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
 
     - name: Display numpy version

From 6185604d132e732a1500cbb43c720b58f0a12c1a Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 21:35:09 +0800
Subject: [PATCH 08/24] Update python 3.8 scipy package version

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index f7f02769..6e8c01bb 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -19,7 +19,7 @@ jobs:
         os: [windows-latest, ubuntu-latest, macos-13, macos-14]
         # python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         versions:
-          - { python: "3.8", numpy: 1.22.4, scipy: 1.13.1 }
+          - { python: "3.8", numpy: 1.22.4, scipy: 1.10.1 }
           - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 }
           - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 }
           - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 }

From a64f2c930eafdf3aa6be4ff96fae0b82864707dd Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 22:01:53 +0800
Subject: [PATCH 09/24] update dependency installing sequence

---
 .github/workflows/python-package.yml | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 6e8c01bb..f32fda53 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -63,14 +63,15 @@ jobs:
       run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
   
     - name: Install other dependencies
+      run: pip install Cython pytest pytest-cov flake8
+
+    - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
-        pip install numpy scipy Cython pytest pytest-cov flake8
+        pip uninstall numpy scipy
+        pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         pip install -e .[tests]
 
-    - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
-      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
-
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
 

From 9eb14df75dbccc253a9c93d21ce330ef56c3d95e Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 22:10:29 +0800
Subject: [PATCH 10/24] Update pinned dependencies numpy scipy installation

---
 .github/workflows/python-package.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index f32fda53..ec3f94fd 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -63,14 +63,14 @@ jobs:
       run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
   
     - name: Install other dependencies
-      run: pip install Cython pytest pytest-cov flake8
+      run: python${{ matrix.versions.python }} -m pip install Cython pytest pytest-cov flake8
 
     - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
-        pip uninstall numpy scipy
-        pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+        python${{ matrix.versions.python }} -m pip uninstall numpy scipy
+        python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
-        pip install -e .[tests]
+        python${{ matrix.versions.python }} -m pip install -e .[tests]
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From d5e2d7f304bc5ac6d9657d62a7aee24738dbccf0 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 22:33:17 +0800
Subject: [PATCH 11/24] Remove pip install -e

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index ec3f94fd..d62c9078 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -70,7 +70,7 @@ jobs:
         python${{ matrix.versions.python }} -m pip uninstall numpy scipy
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
-        python${{ matrix.versions.python }} -m pip install -e .[tests]
+        # python${{ matrix.versions.python }} -m pip install -e .[tests]
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From d7d5e89c003d7e9eb015f8f67bc79a8b348bd728 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 22:38:34 +0800
Subject: [PATCH 12/24] Reordered pinned dependencies step

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index d62c9078..365e767a 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -67,10 +67,10 @@ jobs:
 
     - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
+        python${{ matrix.versions.python }} -m pip install -e .[tests]
         python${{ matrix.versions.python }} -m pip uninstall numpy scipy
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
-        # python${{ matrix.versions.python }} -m pip install -e .[tests]
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From 1ec670a80dc10216fc269445f0e31ca67ab02dc4 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 22:49:49 +0800
Subject: [PATCH 13/24] Attempt installation of pinned bumpy scipy versions

---
 .github/workflows/python-package.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 365e767a..ee18c589 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -67,10 +67,11 @@ jobs:
 
     - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
+        python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+        python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
         python${{ matrix.versions.python }} -m pip uninstall numpy scipy
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
-        python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From aed3d2585d432d2d482a8b75679f7af01dcb7910 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 23:10:55 +0800
Subject: [PATCH 14/24] Confirm pip uninstall numpy scipy

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index ee18c589..9d1e4841 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -70,7 +70,7 @@ jobs:
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
-        python${{ matrix.versions.python }} -m pip uninstall numpy scipy
+        python${{ matrix.versions.python }} -m pip uninstall -y numpy scipy
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
 
     - name: Display numpy version

From a4740d4ae454fbb14c4a1ce8b33f46693f5afb13 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Tue, 25 Jun 2024 23:41:57 +0800
Subject: [PATCH 15/24] Pin circleci numpy version

---
 .circleci/config.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index a47864ea..738f87c9 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -17,8 +17,9 @@ jobs:
           no_output_timeout: 30m
           command: |
             pip install --upgrade pip
-            pip install --only-binary=numpy,scipy numpy==1.22.4 scipy Cython pytest pytest-cov codecov
+            pip install --only-binary=numpy,scipy numpy==1.22.4 scipy==1.10.1 Cython pytest pytest-cov codecov
             pip install -e .[tests]
+            pip install numpy==1.22.4 scipy==1.10.1
       - run:
           name: Run tests
           no_output_timeout: 30m

From 0d784a90604d04d47d075adee95e89581933ab76 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 00:04:42 +0800
Subject: [PATCH 16/24] Remove pip uninstall numpy scipy from python-package

---
 .github/workflows/python-package.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 9d1e4841..4b8d29a3 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -70,7 +70,6 @@ jobs:
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
-        python${{ matrix.versions.python }} -m pip uninstall -y numpy scipy
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
 
     - name: Display numpy version

From 37d4b600f116620751a05efa756467c434ef2f99 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 11:29:11 +0800
Subject: [PATCH 17/24] Set package version limits to setup.py

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 44384bf2..f1bc32a2 100644
--- a/setup.py
+++ b/setup.py
@@ -343,7 +343,7 @@ def run(self):
         "recommendation",
     ],
     ext_modules=extensions,
-    install_requires=["numpy", "scipy", "tqdm", "powerlaw"],
+    install_requires=["numpy<=1.26", "scipy<=1.13", "tqdm", "powerlaw"],
     extras_require={"tests": ["pytest", "pytest-pep8", "pytest-xdist", "pytest-cov", "Flask"]},
     cmdclass=cmdclass,
     packages=find_packages(),

From d2cdbc4b9d298e3b6476f03462767b90375fa8e6 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 11:44:59 +0800
Subject: [PATCH 18/24] Change upperbound limit of numpy to < 2.0.0

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index f1bc32a2..0862ce41 100644
--- a/setup.py
+++ b/setup.py
@@ -343,7 +343,7 @@ def run(self):
         "recommendation",
     ],
     ext_modules=extensions,
-    install_requires=["numpy<=1.26", "scipy<=1.13", "tqdm", "powerlaw"],
+    install_requires=["numpy<2.0.0", "scipy<=1.13.1", "tqdm", "powerlaw"],
     extras_require={"tests": ["pytest", "pytest-pep8", "pytest-xdist", "pytest-cov", "Flask"]},
     cmdclass=cmdclass,
     packages=find_packages(),

From b8b4ed1bb1b8465f7a02ab7d8f37a9e98e4a8164 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 11:45:28 +0800
Subject: [PATCH 19/24] Remove double installation of pinned dependency

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 4b8d29a3..950a3c2d 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -70,7 +70,7 @@ jobs:
         python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
-        python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+        # python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From 96bb78b1290ed230269763140ead0cc23f99f873 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 12:19:24 +0800
Subject: [PATCH 20/24] set upper bound installing to numpy and scipy instead
 of pinning versions

---
 .github/workflows/python-package.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 950a3c2d..10d2a086 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -67,10 +67,9 @@ jobs:
 
     - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
-        python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+        python${{ matrix.versions.python }} -m pip install numpy<2.0.0 scipy<=1.13.1
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
-        # python${{ matrix.versions.python }} -m pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
 
     - name: Display numpy version
       run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"

From 4dcc2e14be993d52d43c80f7418f1520f4cb2f08 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 12:23:59 +0800
Subject: [PATCH 21/24] add quotes to upper bound dependencies

---
 .github/workflows/python-package.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 10d2a086..f7b4f3dc 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -67,7 +67,7 @@ jobs:
 
     - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
       run: |
-        python${{ matrix.versions.python }} -m pip install numpy<2.0.0 scipy<=1.13.1
+        python${{ matrix.versions.python }} -m pip install "numpy<2.0.0" "scipy<=1.13.1"
         python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
         python${{ matrix.versions.python }} -m pip install -e .[tests]
 

From dbad48b16f9a1b3c8b71cd50be60e0e80681f7d6 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Wed, 26 Jun 2024 13:33:08 +0800
Subject: [PATCH 22/24] clean up package action

---
 .github/workflows/python-package.yml | 44 +++++++++++++---------------
 1 file changed, 20 insertions(+), 24 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index f7b4f3dc..f58e2aba 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -17,14 +17,10 @@ jobs:
       fail-fast: false
       matrix:
         os: [windows-latest, ubuntu-latest, macos-13, macos-14]
-        # python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
-        versions:
-          - { python: "3.8", numpy: 1.22.4, scipy: 1.10.1 }
-          - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 }
-          - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 }
-          - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 }
-          - { python: "3.12", numpy: 1.26.4, scipy: 1.13.1 }
-        
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+    env:
+      LIMIT_NUMPY_VERSION: 2.0.0
+      LIMIT_SCIPY_VERSION: 1.13.1
     steps:
     - name: Get number of CPU cores
       uses: SimenB/github-actions-cpu-cores@v2
@@ -32,47 +28,47 @@ jobs:
 
     - uses: actions/checkout@v4
 
-    - name: Setup Python ${{ matrix.versions.python }}
-      if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.versions.python != '3.8') && (matrix.versions.python != '3.9')) }}
+    - name: Setup Python ${{ matrix.python-version }}
+      if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.python-version != '3.8') && (matrix.python-version != '3.9')) }}
       uses: actions/setup-python@v5
       id: pysetup
       with:
-        python-version: ${{ matrix.versions.python }}
+        python-version: ${{ matrix.python-version }}
         cache: 'pip'
 
     - name: Setup Python 3.8-3.9 - macos-arm
-      if: ${{ (matrix.os == 'macos-14') && ((matrix.versions.python == '3.8') || (matrix.versions.python == '3.9')) }}
+      if: ${{ (matrix.os == 'macos-14') && ((matrix.python-version == '3.8') || (matrix.python-version == '3.9')) }}
       run: |
         brew update
-        brew install python@${{ matrix.versions.python }}
+        brew install python@${{ matrix.python-version }}
         curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
-        python${{ matrix.versions.python }} get-pip.py
+        python${{ matrix.python-version }} get-pip.py
 
     - name: Create Python alias for Windows 
       if: matrix.os == 'windows-latest'
       run: |
-        $newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.versions.python }}.exe")
+        $newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.python-version }}.exe")
         New-Item -ItemType HardLink -Path "$newPath" -Value "${{ steps.pysetup.outputs.python-path }}"
 
     - name: Display Python and Pip versions
       run: | 
-        python${{ matrix.versions.python }} -c "import sys; print(sys.version)"
+        python${{ matrix.python-version }} -c "import sys; print(sys.version)"
         pip --version
 
     - name: Upgrade pip wheel setuptools
-      run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
+      run: python${{ matrix.python-version }} -m pip install wheel setuptools pip --upgrade
   
     - name: Install other dependencies
-      run: python${{ matrix.versions.python }} -m pip install Cython pytest pytest-cov flake8
+      run: python${{ matrix.python-version }} -m pip install Cython pytest pytest-cov flake8
 
-    - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
+    - name: Install other dependencies
       run: |
-        python${{ matrix.versions.python }} -m pip install "numpy<2.0.0" "scipy<=1.13.1"
-        python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
-        python${{ matrix.versions.python }} -m pip install -e .[tests]
+        python${{ matrix.python-version }} -m pip install Cython pytest pytest-cov flake8 "numpy<${{ env.LIMIT_NUMPY_VERSION }}" "scipy<=${{ env.LIMIT_SCIPY_VERSION }}"
+        python${{ matrix.python-version }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
+        python${{ matrix.python-version }} -m pip install -e .[tests]
 
     - name: Display numpy version
-      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
+      run: python${{ matrix.python-version }} -c "import numpy; print(numpy.__version__)"
 
     - name: Lint with flake8
       run: |
@@ -83,4 +79,4 @@ jobs:
     
     - name: Test with pytest
       run: |
-        python${{ matrix.versions.python }} -m pytest --cov=cornac
+        python${{ matrix.python-version }} -m pytest --cov=cornac

From cb137d8e29a49900361fb28be6bade7a3a394f99 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Thu, 27 Jun 2024 17:40:49 +0800
Subject: [PATCH 23/24] standardise circleci numpy scipy versioning

---
 .circleci/config.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index 738f87c9..3702b089 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -8,6 +8,9 @@ jobs:
   build-and-test: 
     docker:
       - image: cimg/python:3.10.2
+        environment:
+          LIMIT_NUMPY_VERSION: 2.0.0
+          LIMIT_SCIPY_VERSION: 1.13.1
     steps:
       - checkout
       - python/install-packages:
@@ -17,9 +20,8 @@ jobs:
           no_output_timeout: 30m
           command: |
             pip install --upgrade pip
-            pip install --only-binary=numpy,scipy numpy==1.22.4 scipy==1.10.1 Cython pytest pytest-cov codecov
+            pip install --only-binary=numpy,scipy "numpy<$LIMIT_NUMPY_VERSION" "scipy<=$LIMIT_SCIPY_VERSION" Cython pytest pytest-cov codecov
             pip install -e .[tests]
-            pip install numpy==1.22.4 scipy==1.10.1
       - run:
           name: Run tests
           no_output_timeout: 30m

From a2a7d938286e14be3663da183abf3d4daadac641 Mon Sep 17 00:00:00 2001
From: darrylong <darrylong@users.noreply.github.com>
Date: Thu, 27 Jun 2024 17:51:18 +0800
Subject: [PATCH 24/24] Update publish actions versioning to align with package

---
 .github/workflows/python-publish.yml | 40 +++++++++++++---------------
 1 file changed, 19 insertions(+), 21 deletions(-)

diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
index b022f52a..fdb260c7 100644
--- a/.github/workflows/python-publish.yml
+++ b/.github/workflows/python-publish.yml
@@ -12,6 +12,10 @@ on:
   release:
     types: [published]
 
+env:
+  LIMIT_NUMPY_VERSION: 2.0.0
+  LIMIT_SCIPY_VERSION: 1.13.1
+
 jobs:
   build-wheels:
     name: Building on ${{ matrix.os }}
@@ -20,58 +24,52 @@ jobs:
       fail-fast: false
       matrix:
         os: [windows-latest, ubuntu-latest, macos-13, macos-14]
-        versions:
-          - { python: "3.8", numpy: 1.22.4, scipy: 1.13.1 }
-          - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 }
-          - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 }
-          - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 }
-          - { python: "3.12", numpy: 1.26.4, scipy: 1.13.1 }
-
+        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
     steps:
     - uses: actions/checkout@v4
     
-    - name: Setup Python ${{ matrix.versions.python }}
-      if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.versions.python != '3.8') && (matrix.versions.python != '3.9')) }}
+    - name: Setup Python ${{ matrix.python-version }}
+      if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.python-version != '3.8') && (matrix.python-version != '3.9')) }}
       uses: actions/setup-python@v5
       id: pysetup
       with:
-        python-version: ${{ matrix.versions.python }}
+        python-version: ${{ matrix.python-version }}
         cache: 'pip'
 
     - name: Setup Python 3.8-3.9 - macos-arm
-      if: ${{ (matrix.os == 'macos-14') && ((matrix.versions.python == '3.8') || (matrix.versions.python == '3.9')) }}
+      if: ${{ (matrix.os == 'macos-14') && ((matrix.python-version == '3.8') || (matrix.python-version == '3.9')) }}
       run: |
         brew update
-        brew install python@${{ matrix.versions.python }}
+        brew install python@${{ matrix.python-version }}
         curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
-        python${{ matrix.versions.python }} get-pip.py
+        python${{ matrix.python-version }} get-pip.py
 
     - name: Create Python alias for Windows 
       if: matrix.os == 'windows-latest'
       run: |
-        $newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.versions.python }}.exe")
+        $newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.python-version }}.exe")
         New-Item -ItemType HardLink -Path "$newPath" -Value "${{ steps.pysetup.outputs.python-path }}"
 
     - name: Display Python and Pip versions
       run: | 
-        python${{ matrix.versions.python }} -c "import sys; print(sys.version)"
+        python${{ matrix.python-version }} -c "import sys; print(sys.version)"
         pip --version
 
     - name: Upgrade pip wheel setuptools
-      run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade
+      run: python${{ matrix.python-version }} -m pip install wheel setuptools pip --upgrade
 
-    - name: Install numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }}
-      run: pip install numpy==${{ matrix.versions.numpy }} scipy==${{ matrix.versions.scipy }}
+    - name: Install numpy, scipy
+      run: pip install "numpy<${{ env.LIMIT_NUMPY_VERSION }}" "scipy<=${{ env.LIMIT_SCIPY_VERSION }}"
     
     - name: Install other dependencies
       run: |
         pip install Cython wheel
     
     - name: Display numpy version
-      run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)"
+      run: python${{ matrix.python-version }} -c "import numpy; print(numpy.__version__)"
 
     - name: Build wheels
-      run: python${{ matrix.versions.python }} setup.py bdist_wheel
+      run: python${{ matrix.python-version }} setup.py bdist_wheel
         
     - name: Rename Linux wheels to supported platform of PyPI
       if: matrix.os == 'ubuntu-latest'
@@ -105,7 +103,7 @@ jobs:
 
     - name: Install numpy
       run: |
-        python -m pip install numpy==1.22.4 scipy==1.13.1
+        python -m pip install "numpy<${{ env.LIMIT_NUMPY_VERSION }}" "scipy<=${{ env.LIMIT_SCIPY_VERSION }}"
         python -c "import numpy; print(numpy.__version__)"
 
     - name: Install other dependencies