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run_reports.m
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run_reports.m
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% this script generates lesion view report without GUI
clearvars;
close all
clc;
bidsDir = '/Volumes/Vision/UsersShare/Amna/Multiple_Sclerosis_BIDS';
subjects = dir(fullfile(bidsDir,'derivatives','tmp_lesion','*sub*'));
addpath(genpath(fullfile(pwd,'noGuiFuncs')));
%% run all sub
tic
for whichSub = 1:numel(subjects)
subject = subjects(whichSub).name;
hasLesion1 = dir(fullfile(subjects(whichSub).folder,subject,'ses-01','*lesion*nii*'));
hasLesion2 = dir(fullfile(subjects(whichSub).folder,subject,'ses-02','*lesion*nii*'));
if numel(hasLesion1)&&numel(hasLesion2)
%lv_report(subject);
lv_assets(subject);
end
end
toc
%% run one sub
% lv_assets('sub-004');