v1.7.0

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 10th Mar 2022.

It includes the following changes, since the last tag:

🌟 What's Changed

• Entry taxa by @gustavo-salazar in #83
• Interpro alignments by @matthiasblum in #82
• Search by gene by @gustavo-salazar in #85
• Use default IDA index when running tests by @matthiasblum in #86

Full Changelog: v1.6.0...v1.7.0

Live version - 10 Mar 2022

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 10th Mar 2022.

It includes the following changes, since the last tag:

🌟New Features

• Includes IDA representative data #78
• Includes sunburst data #71
• Improvement on the cache handling #77

🛠Fixes

• Fixes url to logo

📃Documentation

• Updates in documentation and swagger file #76

🏡House keeping

• Dependencies updated including Django and DRF
• Removing sleep for functional tests

API release for InterPro data 87.0

This release includes the following notable changes:

• Replaced trRosetta Models with RoseTTAFold structure predictions
• Added filter for proteins with structure model match
• Updated the GitHub documentation

Live version - 17th June 2021

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 7th June 2021.

It includes the following changes, since the last tag:

🌟New Features

• Predicted LDDT scores per residue added to Structural model query. It is accessed by adding the modifier 'model:lddt'. This replaces the old modifier 'model:info'

Live version - 13th April 2021

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 12th April 2021.

It includes the following changes, since the last tag:

🌟New Features

• Conservation data output was derived only for Pfam entries before. Now it supported for any member database.

🛠Fixes

• When HMMER fails to match an entry to protein, warnings are added.

🏡House keeping

• Django and Django Rest Framework updated.

Live API - 11th February 2021

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 11th February 2021.

It includes the following changes, since the last tag:

🌟New Features

• Scientific_name filter added to taxonomy endpoint that fetches the exact match with counters.
• Instead of the flag use_model_as_payload the registration of a modifier now has the parameter type. Type accepts a new modifier type - EXTEND_PAYLOAD with the other two(FILTER and REPLACE_PAYLOAD).
• Structural models data is added. The two modifiers to use in /entry/memberDB/accession are:
  • model:structure returns the PDB content of models.
  • model:contacts returns a JSON with the predicted contacts for the model.

🏡House keeping

• Few changes in the Protein model to improve disk space involving sequence, residue and extra_features.
• The IDA modifier is separated in two more atomic modifiers: get_domain_architectures and filter_by_domain_architectures.
• README Documentation updated.

Live API - December 3rd 2020

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 3rd Dec 2020
It includes the following changes, since the last tag:

🏡House keeping

• Continuous integration migrated into GitHub Actions.

Live API - 8th October 2020

This is the code set in the live API - https://www.ebi.ac.uk/interpro/api/ on 8th October 2020.

It includes the following changes, since the last tag:

🌟New Features

• Authors and Literature are added to Pfam sets.
• Pfam entries have additional details field accessed as extra_field.

🛠Fixes

• #28 Buttons in the web view of the API are fixed and the look is enhanced with some more styles.
• Escaping characters for utils/accession to support the search.

🏡House keeping

• Dependencies update

Live API - 13th August 2020

This is the code set in the live API site https://www.ebi.ac.uk/interpro/api/ on 13th August 2020.

It includes the change of WikiPedia field of Entry served as JSON instead of JSON string.

Live API by 18 Jun 2020

This is the code set in the live API site https://www.ebi.ac.uk/interpro/api/ on 18 Jun 2020.

It includes the following changes, since the last tag:

🌟New Features

• Code to support /wwwapi additionally to /api.
• Saving 204 and 410 in cache
• Adding pathways and interactions for interpro entries
• Support for deleted entries, returns a 410 http status code and the history of such entry.
• IDA searches in an independent elasticsearch index
• adding support for exact ida search
• Including Lineage when counting.
• new endpoint to get the swagger file

🛠Fixes

• Changes in the model to reflect improvements in the DW built. Example, removing size and `other_names from the protein model.
• Closing connections to avoid issues when running in gunicorn
• optimising the taxonomy per entry modifier
• Adding headers for gzip alignment files.

🏡House keeping

• Dependencies update
• Update of the Swagger file

📃Documentation

• New developer's documentation for:
  • QuerysetManager
  • Search controller
  • Modifiers
  • Serializers