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fsCommand.m
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fsCommand.m
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function cmd = fsCommand(runCond,acqCondLabel,stimCondLabel)
global srcFs
if ~exist('acqCondLabel','var'); acqCondLabel = []; end
if ~exist('stimCondLabel','var'); stimCondLabel = []; end
if isempty(acqCondLabel); acqCondLabel = 'vfMRI'; end
runCondAcqList = fields(runCond);
runCondAcq = runCondAcqList{ismember(runCondAcqList,acqCondLabel)};
runCondStimList = fields(runCond.(runCondAcq));
if isempty(stimCondLabel)
runFlag = 0;
else
runFlag = 1;
runCondStimList = runCondStimList(ismember(runCondStimList,stimCondLabel));
end
cmd = {srcFs};
cmd{end+1} = ['freeview -subtitle ' runCond.(runCondAcq).(runCondStimList{1}).sub ' \'];
%%% sub underlay
% if ~runFlag
volAnatSub = fields(runCond.(runCondAcq)); volAnatSub = runCond.(runCondAcq).(volAnatSub{1}).volAnatSub;
fList = cellstr(volAnatSub.mask.ulay.f);
label = strjoin({'subUlay'},'_');
opt = {...
['name=' label]...
};
for f = 1:length(fList)
cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
end
% else
% volAnat = fields(runCond.(runCondAcq)); volAnat = runCond.(runCondAcq).(volAnat{1}).volTs(1).volResp.base;
% runCond.(runCondAcq).(volAnat{1}).volTsSes.mri
% runCond.(runCondAcq).(volAnat{1}).fPreprocUnderSesCatRunCatAvList
% end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
%%% resp
if runFlag
%%%% individual run
fList = [volResp.ts];
fList = {fList.fspec};
fBaseList = [volResp.base];
fBaseList = {fBaseList.fspec};
for f = 1:length(fList)
label = strjoin({...
replace(runCondStimList{rc},'_','-')...
ses{f}...
run{f}...
'resp'...
},'_');
opt = {...
['name=' label]...
'visible=0'};
cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
label = strjoin({...
replace(runCondStimList{rc},'_','-')...
ses{f}...
run{f}...
'respBase'...
},'_');
opt = {...
['name=' label]...
'visible=0'};
cmd{end+1} = [strjoin([fBaseList(f) opt],':') ' \'];
end
end
end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
%%% resp
%%%% run catenated
fList = [volRespCat.ts];
fList = {fList.fspec};
for f = 1:length(fList)
label = strjoin({...
replace(runCondStimList{rc},'_','-')...
% ses{f}...
'respCat'...
},'_');
opt = {...
['name=' label]...
'visible=0'};
cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
end
end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
% if ~runFlag
% %%% resp
% %%%% run averaged
% fList = [volRespSes.ts];
% fList = {fList.fspec};
% for f = 1:length(fList)
% label = strjoin({...
% replace(runCondStimList{rc},'_','-')...
% % ses{f}...
% 'respAv'...
% },'_');
% opt = {...
% ['name=' label]...
% 'visible=0'};
% cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
% end
% end
end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
if runFlag
%%% respF
%%%% individual run
fList = [volResp.F];
fList = {fList.fspec};
for f = 1:length(fList)
label = strjoin({...
replace(runCondStimList{rc},'_','-')...
ses{f}...
run{f}...
'respF'...
},'_');
opt = {...
['name=' label]...
'visible=1'...
'colormap=heat'...
'heatscale=2.5,5'};
cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
end
end
end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
%%% respF
%%%% run catenated
fList = [volRespCat.F];
fList = {fList.fspec};
for f = 1:length(fList)
label = strjoin({...
replace(runCondStimList{rc},'_','-')...
% ses{f}...
'respFcat'...
},'_');
opt = {...
['name=' label]...
'visible=1'...
'colormap=heat'...
'heatscale=2.5,5'};
cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
end
end
for rc = 1:length(runCondStimList)
acqCondLabel = runCondStimList{rc};
if ~isfield(runCond.(runCondAcq),runCondStimList{rc}); continue; end
volTs = runCond.(runCondAcq).(acqCondLabel).volTs;
volTsSes = runCond.(runCondAcq).(acqCondLabel).volTsSes;
volResp = [volTs.volResp];
volRespCat = [volTsSes.volRespCat];
volRespSes = [volTsSes.volRespSes];
ses = cellstr(strcat('ses-',runCond.(runCondAcq).(acqCondLabel).ses));
run = runCond.(runCondAcq).(acqCondLabel).bidsList(:,contains(runCond.(runCondAcq).(acqCondLabel).bidsList(1,:),'run-'));
% if ~runFlag
% %%% respF
% %%%% run averaged
% fList = [volRespSes.F];
% fList = {fList.fspec};
% for f = 1:length(fList)
% label = strjoin({...
% replace(runCondStimList{rc},'_','-')...
% % ses{f}...
% 'respFav'...
% },'_');
% opt = {...
% ['name=' label]...
% 'visible=1'...
% 'colormap=heat'...
% 'heatscale=2.5,5'};
% cmd{end+1} = [strjoin([fList(f) opt],':') ' \'];
% end
% end
end
cmd{end} = replace(cmd{end},' \','');
clipboard('copy',strjoin(cmd,newline))
disp(strjoin(cmd,[' \\' newline]))