index.qmd

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title: "Quantification of resilience in farm animals"
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This is a supporting website for the paper:

**Animal Board Invited Review: Quantification of resilience in farm animals**. *Masoomeh Taghipoor, Matti Pastell, Olivier Martin, Hieu Nguyen Ba, Jaap van Milgen, Andrea Doesch Wilson, Christelle Loncke, Laurence Puillet, Nicolas C Friggens, & Rafael Muñoz-Tamayo*. Animal (2023), <https://doi.org/10.1016/j.animal.2023.100925>


It hosts the following code examples to supplement the paper:

- [Dynamic semi-mechanistic model](examples/post_treatment_of_data/Model_MT.html#case-study-1.dynamic-semi-mechanistic-model)

- [Differential smoothing model](examples/post_treatment_of_data/Model_MT.html#case-study-2.-differential-smoothing-model)

- [Using switching dynamic linear models for detecting perturbations](examples/switching_model/switching_model.html)

- [Example of an state observer to estimate the perturbed component of the body weight trajectory](examples/observer/gobserver_RMT.html)