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+"":[7,0,0,13,0] }; diff --git a/newick_generator.html b/newick_generator.html index 3554363e..a51659e3 100644 --- a/newick_generator.html +++ b/newick_generator.html @@ -186,9 +186,9 @@

quetzal::format::newick::TreeAlign
Set a root node branch length to zero. Remove all nested comments.
Definition: from_network.hpp:167

Since there are no comments stored in the labels of the generated random tree, the output of the different flavors are here quite similar:

Output

-
1 ((,),(,(,))):0.0;
-
2 ((,),(,(,)));
-
3 ((,),(,(,)));
+
1 (,((,(,)),)):0.0;
+
2 (,((,(,)),));
+
3 (,((,(,)),));

Custom properties

@@ -237,7 +237,7 @@

edge_info
Definition: newick_parser_2.cpp:8
vertex_info
Definition: coalescence_binary_tree_2.cpp:5

Output

-
1 (((O:4,Z:7)Q:4,X:5)W:9,(M:5,Z:6)E:4)A:0.0;
+
1 (((L:8,Z:2)H:1,T:0)N:2,(R:2,E:3)I:0)Y:0.0;

From a Quetzal k-ary tree

@@ -277,9 +277,9 @@

quetzal::coalescence::get_random_k_ary_tree
std::pair< quetzal::coalescence::k_ary_tree< Vertex, Edge >, typename quetzal::coalescence::k_ary_tree< Vertex, Edge >::vertex_descriptor > get_random_k_ary_tree(int n_leaves, Generator &rng)
Generate a random k-ary tree.
Definition: k_ary_tree.hpp:727

Since there are no comments stored in the labels of the generated random tree, the output of the different flavors are here quite similar:

Output

-
1 ((,),(,(,))):0.0;
-
2 ((,),(,(,)));
-
3 ((,),(,(,)));
+
1 (,(,(,(,)))):0.0;
+
2 (,(,(,(,))));
+
3 (,(,(,(,))));

Custom properties

@@ -326,7 +326,7 @@

39  return 0;
40 }

Output

-
1 (B:6,(E:6,(F:0,(V:5,R:3)Z:1)B:5)V:6)H;
+
1 ((P:6,(D:8,L:7)S:6)L:5,(R:7,J:6)T:6)T;

Interfacing legacy code