From c26a2cc6c2323d7df5f40c5b80e5bf26717a12cb Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Mon, 11 Mar 2019 12:18:19 +0100
Subject: [PATCH 1/8] Bump dev version

---
 build.gradle | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build.gradle b/build.gradle
index d5dadd3e..b6f3e51a 100644
--- a/build.gradle
+++ b/build.gradle
@@ -30,7 +30,7 @@ subprojects {
     // Configuration                                                             //
     //---------------------------------------------------------------------------//
 
-    version = '0.12.0'
+    version = '0.12.1-SNAPSHOT'
     group = 'org.radarbase'
     ext.githubRepoName = 'RADAR-base/radar-commons'
 

From 7ace1679607b50bc8b5ac221fefccb1c1ee5ba85 Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Mon, 11 Mar 2019 12:24:21 +0100
Subject: [PATCH 2/8] Fix bintray org

---
 gradle/publishing.gradle | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/gradle/publishing.gradle b/gradle/publishing.gradle
index bab00a0f..c3703871 100644
--- a/gradle/publishing.gradle
+++ b/gradle/publishing.gradle
@@ -82,14 +82,14 @@ publishing {
 }
 
 bintray {
-    user project.hasProperty('bintrayUser') ? project.property('bintrayUser') : System.getenv('BINTRAY_USER')
-    key project.hasProperty('bintrayApiKey') ? project.property('bintrayApiKey') : System.getenv('BINTRAY_API_KEY')
-    override false
-    publications 'mavenJar'
+    user = project.hasProperty('bintrayUser') ? project.property('bintrayUser') : System.getenv('BINTRAY_USER')
+    key = project.hasProperty('bintrayApiKey') ? project.property('bintrayApiKey') : System.getenv('BINTRAY_API_KEY')
+    override = false
+    publications = 'mavenJar'
     pkg {
         repo = project.group
         name = project.name
-        userOrg = 'radar-cns'
+        userOrg = 'radar-base'
         desc = project.description
         licenses = ['Apache-2.0']
         websiteUrl = website

From d5d51792c33fa22f3d8dd3fdb8fcc5295ef0bd0a Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Mon, 18 Mar 2019 14:51:10 +0100
Subject: [PATCH 3/8] Fix publication and dependencies

---
 gradle/publishing.gradle           | 2 +-
 radar-commons-testing/build.gradle | 7 ++++++-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/gradle/publishing.gradle b/gradle/publishing.gradle
index c3703871..b81f2dc5 100644
--- a/gradle/publishing.gradle
+++ b/gradle/publishing.gradle
@@ -85,7 +85,7 @@ bintray {
     user = project.hasProperty('bintrayUser') ? project.property('bintrayUser') : System.getenv('BINTRAY_USER')
     key = project.hasProperty('bintrayApiKey') ? project.property('bintrayApiKey') : System.getenv('BINTRAY_API_KEY')
     override = false
-    publications = 'mavenJar'
+    publications 'mavenJar'
     pkg {
         repo = project.group
         name = project.name
diff --git a/radar-commons-testing/build.gradle b/radar-commons-testing/build.gradle
index 8fb78f6f..b8ca6ef1 100644
--- a/radar-commons-testing/build.gradle
+++ b/radar-commons-testing/build.gradle
@@ -18,7 +18,12 @@ apply plugin: 'application'
 
 mainClassName = 'org.radarbase.mock.MockProducer'
 
+configurations {
+    applicationRuntimeOnly
+}
+
 run {
+    classpath += configurations.applicationRuntimeOnly
     if (project.hasProperty("mockConfig")) {
         args project.property("mockConfig")
     } else {
@@ -49,7 +54,7 @@ dependencies {
         exclude group: 'org.slf4j', module: 'slf4j-log4j12'
     }
 
-    runtimeOnly group: 'org.slf4j', name: 'slf4j-simple', version: slf4jVersion
+    applicationRuntimeOnly group: 'org.slf4j', name: 'slf4j-simple', version: slf4jVersion
 
     // Direct producer uses KafkaAvroSerializer if initialized
     testImplementation group: 'junit', name: 'junit', version: junitVersion

From 68b0d4976257c403e45606e791c875fb7bc1fa5e Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <support@dependabot.com>
Date: Mon, 29 Apr 2019 06:18:50 +0000
Subject: [PATCH 4/8] Bump opencsv from 4.5 to 4.6

Bumps opencsv from 4.5 to 4.6.

Signed-off-by: dependabot[bot] <support@dependabot.com>
---
 radar-commons-testing/build.gradle | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/radar-commons-testing/build.gradle b/radar-commons-testing/build.gradle
index 8fb78f6f..522ede89 100644
--- a/radar-commons-testing/build.gradle
+++ b/radar-commons-testing/build.gradle
@@ -41,7 +41,7 @@ dependencies {
     api group: 'org.apache.avro', name: 'avro', version: avroVersion
     api group: 'org.radarcns', name: 'radar-schemas-commons', version: radarSchemasVersion
 
-    implementation group: 'com.opencsv', name: 'opencsv', version: '4.5'
+    implementation group: 'com.opencsv', name: 'opencsv', version: '4.6'
     implementation group: 'com.fasterxml.jackson.core' , name: 'jackson-databind' , version: jacksonVersion
     implementation group: 'org.apache.kafka', name: 'kafka-clients', version: kafkaVersion
     implementation (group: 'io.confluent', name: 'kafka-avro-serializer', version: confluentVersion) {

From dff16ca585dd556f963a5eab2c4e05b0adf06338 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <support@dependabot.com>
Date: Wed, 1 May 2019 06:17:04 +0000
Subject: [PATCH 5/8] Bump com.jfrog.artifactory from 4.9.1 to 4.9.6

Bumps com.jfrog.artifactory from 4.9.1 to 4.9.6.

Signed-off-by: dependabot[bot] <support@dependabot.com>
---
 build.gradle | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build.gradle b/build.gradle
index d5dadd3e..b37bd307 100644
--- a/build.gradle
+++ b/build.gradle
@@ -16,7 +16,7 @@
 plugins {
     // Get bintray version
     id 'com.jfrog.bintray' version '1.8.4' apply false
-    id 'com.jfrog.artifactory' version '4.9.1' apply false
+    id 'com.jfrog.artifactory' version '4.9.6' apply false
     id 'com.commercehub.gradle.plugin.avro' version '0.16.0'
 }
 

From 64e14afdb72714e522bf2d255a4c7711d69304a1 Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Tue, 21 May 2019 08:46:27 +0200
Subject: [PATCH 6/8] Updated dependencies

---
 build.gradle                                     | 16 ++++++++--------
 .../collector/NumericAggregateCollectorTest.java |  8 ++++----
 .../java/org/radarbase/data/AvroRecordData.java  |  2 +-
 3 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/build.gradle b/build.gradle
index 69cad038..2c94e95f 100644
--- a/build.gradle
+++ b/build.gradle
@@ -35,16 +35,16 @@ subprojects {
     ext.githubRepoName = 'RADAR-base/radar-commons'
 
     ext.slf4jVersion = '1.7.26'
-    ext.kafkaVersion = '2.1.1'
+    ext.kafkaVersion = '2.2.0-cp2'
     ext.avroVersion = '1.8.2'
-    ext.confluentVersion = '5.1.2'
-    ext.jacksonVersion = '2.9.8'
-    ext.okhttpVersion = '3.13.1'
+    ext.confluentVersion = '5.2.1'
+    ext.jacksonVersion = '2.9.9'
+    ext.okhttpVersion = '3.14.1'
     ext.junitVersion = '4.12'
-    ext.mockitoVersion = '2.24.5'
+    ext.mockitoVersion = '2.27.0'
     ext.hamcrestVersion = '1.3'
-    ext.codacyVersion = '4.0.5'
-    ext.radarSchemasVersion = '0.4.3'
+    ext.codacyVersion = '6.0.0'
+    ext.radarSchemasVersion = '0.5.0'
     ext.orgJsonVersion = '20180813'
 
     ext.githubUrl = "https://github.com/$githubRepoName"
@@ -111,5 +111,5 @@ subprojects {
 }
 
 wrapper {
-    gradleVersion '5.2.1'
+    gradleVersion '5.4.1'
 }
diff --git a/radar-commons-server/src/test/java/org/radarbase/stream/collector/NumericAggregateCollectorTest.java b/radar-commons-server/src/test/java/org/radarbase/stream/collector/NumericAggregateCollectorTest.java
index a7879c69..13e60a86 100644
--- a/radar-commons-server/src/test/java/org/radarbase/stream/collector/NumericAggregateCollectorTest.java
+++ b/radar-commons-server/src/test/java/org/radarbase/stream/collector/NumericAggregateCollectorTest.java
@@ -148,19 +148,19 @@ public void testAddRecord() {
     @Test
     public void testAddRecordWithNull() {
         this.valueCollector = new NumericAggregateCollector("recordsCached", ApplicationRecordCounts.getClassSchema(), false);
-        valueCollector.add(new ApplicationRecordCounts(0d, 1, 0, 1));
+        valueCollector.add(new ApplicationRecordCounts(0d, 1L, 0L, 1));
         assertEquals(1, valueCollector.getCount());
         assertEquals(1d, valueCollector.getMean(), 1e-5d);
-        valueCollector.add(new ApplicationRecordCounts(0d, null, 0, 1));
+        valueCollector.add(new ApplicationRecordCounts(0d, null, 0L, 1));
         assertEquals(1, valueCollector.getCount());
         assertEquals(1d, valueCollector.getMean(), 1d);
-        valueCollector.add(new ApplicationRecordCounts(0d, 2, 0, 1));
+        valueCollector.add(new ApplicationRecordCounts(0d, 2L, 0L, 1));
         assertEquals(2, valueCollector.getCount());
         assertEquals(1.5d, valueCollector.getMean(), 1e-5d);
     }
 
     @Test
-    public void testSerialization() throws IOException {
+    public void testSerialization() {
         valueCollector = new NumericAggregateCollector();
         NumericAggregateState state = new NumericAggregateState();
         state.setName("test");
diff --git a/radar-commons/src/main/java/org/radarbase/data/AvroRecordData.java b/radar-commons/src/main/java/org/radarbase/data/AvroRecordData.java
index 2451f4be..9180e7a6 100644
--- a/radar-commons/src/main/java/org/radarbase/data/AvroRecordData.java
+++ b/radar-commons/src/main/java/org/radarbase/data/AvroRecordData.java
@@ -49,7 +49,7 @@ public Iterator<V> iterator() {
 
     @Override
     public boolean isEmpty() {
-        return records.isEmpty();
+        return false;
     }
 
     @Override

From c8e2bc98e4b8b63f8ccb4e2d24e54bada1f82bbc Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Tue, 21 May 2019 08:48:02 +0200
Subject: [PATCH 7/8] Updated gradle wrapper

---
 gradle/wrapper/gradle-wrapper.jar        | Bin 55190 -> 55616 bytes
 gradle/wrapper/gradle-wrapper.properties |   2 +-
 gradlew                                  |  18 +++++++++++++++++-
 gradlew.bat                              |  18 +++++++++++++++++-
 4 files changed, 35 insertions(+), 3 deletions(-)

diff --git a/gradle/wrapper/gradle-wrapper.jar b/gradle/wrapper/gradle-wrapper.jar
index 87b738cbd051603d91cc39de6cb000dd98fe6b02..5c2d1cf016b3885f6930543d57b744ea8c220a1a 100644
GIT binary patch
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diff --git a/gradle/wrapper/gradle-wrapper.properties b/gradle/wrapper/gradle-wrapper.properties
index 44e7c4d1..f4d7b2bf 100644
--- a/gradle/wrapper/gradle-wrapper.properties
+++ b/gradle/wrapper/gradle-wrapper.properties
@@ -1,5 +1,5 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-5.2.1-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-5.4.1-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists
diff --git a/gradlew b/gradlew
index af6708ff..b0d6d0ab 100755
--- a/gradlew
+++ b/gradlew
@@ -1,5 +1,21 @@
 #!/usr/bin/env sh
 
+#
+# Copyright 2015 the original author or authors.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
 ##############################################################################
 ##
 ##  Gradle start up script for UN*X
@@ -28,7 +44,7 @@ APP_NAME="Gradle"
 APP_BASE_NAME=`basename "$0"`
 
 # Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-DEFAULT_JVM_OPTS='"-Xmx64m"'
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
 
 # Use the maximum available, or set MAX_FD != -1 to use that value.
 MAX_FD="maximum"
diff --git a/gradlew.bat b/gradlew.bat
index 0f8d5937..15e1ee37 100644
--- a/gradlew.bat
+++ b/gradlew.bat
@@ -1,3 +1,19 @@
+@rem
+@rem Copyright 2015 the original author or authors.
+@rem
+@rem Licensed under the Apache License, Version 2.0 (the "License");
+@rem you may not use this file except in compliance with the License.
+@rem You may obtain a copy of the License at
+@rem
+@rem      http://www.apache.org/licenses/LICENSE-2.0
+@rem
+@rem Unless required by applicable law or agreed to in writing, software
+@rem distributed under the License is distributed on an "AS IS" BASIS,
+@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+@rem See the License for the specific language governing permissions and
+@rem limitations under the License.
+@rem
+
 @if "%DEBUG%" == "" @echo off
 @rem ##########################################################################
 @rem
@@ -14,7 +30,7 @@ set APP_BASE_NAME=%~n0
 set APP_HOME=%DIRNAME%
 
 @rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-set DEFAULT_JVM_OPTS="-Xmx64m"
+set DEFAULT_JVM_OPTS="-Xmx64m" "-Xms64m"
 
 @rem Find java.exe
 if defined JAVA_HOME goto findJavaFromJavaHome

From 5bcce67f040822ae1384c97301526d2292ab2fc3 Mon Sep 17 00:00:00 2001
From: Joris Borgdorff <github@blootsvoets.net>
Date: Tue, 21 May 2019 08:48:52 +0200
Subject: [PATCH 8/8] Bump version

---
 README.md    | 8 ++++----
 build.gradle | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 512b524f..2dbbcc10 100644
--- a/README.md
+++ b/README.md
@@ -14,7 +14,7 @@ repositories {
 }
 
 dependencies {
-    implementation group: 'org.radarbase', name: 'radar-commons', version: '0.12.0'
+    implementation group: 'org.radarbase', name: 'radar-commons', version: '0.12.1'
 }
 ```
 
@@ -26,7 +26,7 @@ repositories {
 }
 
 dependencies {
-    implementation group: 'org.radarbase', name: 'radar-commons-server', version: '0.12.0'
+    implementation group: 'org.radarbase', name: 'radar-commons-server', version: '0.12.1'
 }
 ```
 
@@ -40,7 +40,7 @@ repositories {
 }
 
 dependencies {
-    testImplementation group: 'org.radarbase', name: 'radar-commons-testing', version: '0.12.0'
+    testImplementation group: 'org.radarbase', name: 'radar-commons-testing', version: '0.12.1'
 }
 ```
 
@@ -53,7 +53,7 @@ repositories {
 }
 
 dependencies {
-    runtimeOnly group: 'org.radarbase', name: 'radar-commons-unsafe', version: '0.12.0'
+    runtimeOnly group: 'org.radarbase', name: 'radar-commons-unsafe', version: '0.12.1'
 }
 ```
 
diff --git a/build.gradle b/build.gradle
index 2c94e95f..6fc7d184 100644
--- a/build.gradle
+++ b/build.gradle
@@ -30,7 +30,7 @@ subprojects {
     // Configuration                                                             //
     //---------------------------------------------------------------------------//
 
-    version = '0.12.1-SNAPSHOT'
+    version = '0.12.1'
     group = 'org.radarbase'
     ext.githubRepoName = 'RADAR-base/radar-commons'