-
get_annotation()
: get a dataframe with all current annotation in a RiboClass. -
remove_annotation()
: Added a new parameter to select a subset of annotation to remove.
- Added a
NEWS.md
file to track changes to the package.
plot_PCA()
has been renamed toplot_pca()
.
- Correspondence analysis for samples' counts :
plot_coa()
- Heatmaps:
plot_heatmap()
andplot_heatmap_corr()
- "Simple" boxplots :
boxplot_count()
(by sample) andboxplot_cscores()
(by site) - Boxplot comparing c-score by condition for sites considered as differential
plot_diff_sites()
- And others:
plot_counts_env()
,plot_counts_fraction()
...
-
Error messages are now using Cli package for better clarity
-
More error messages to help the users
compute_cscore()
has drastically been improved in terms of performance
First public version of rRMSAnalyzer 🥳 !
Only main features will be shown here :
-
C-score computation for all positions (
compute_cscore()
) -
Technical biases adjustment with CombatSeq (
adjust_bias()
) -
Principal Component Analysis (
plot_PCA()
)