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DESCRIPTION
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DESCRIPTION
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Package: DAtest
Title: Comparing Differential Abundance/Expression Methods
Version: 2.8.0
Authors@R: person("Jakob", "Russel",
email = "russel2620@gmail.com",
role = c("aut", "cre"))
Description: Runs multiple differential abundance/expressions methods,
with the same standardized input and output,
to compare their results and test which are better at finding spiked features.
Depends: R (>= 3.2.5)
biocViews: Sequencing,
RNASeq,
Microbiome,
GeneExpression,
Normalization,
DifferentialExpression,
StatisticalMethod,
Regression,
Metagenomics
Imports: foreach,
parallel,
doParallel,
snow,
doSNOW,
MASS,
pROC,
ggplot2,
cowplot,
lme4,
nlme,
stats,
methods,
utils,
graphics
Suggests: lsmeans,
eulerr,
venneuler,
pscl,
samr,
statmod,
ALDEx2 (>= 1.14),
baySeq (>= 2.16),
limma (>= 3.38),
edgeR (>= 3.24),
mvabund (>= 4.0),
phyloseq (>= 1.26),
DESeq2 (>= 1.22),
metagenomeSeq (>= 1.24),
ANCOMBC
License: GPL (>= 3) | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
BugReports: https://github.com/Russel88/DAtest/issues