HRPI: Human ReProgramming Intermediates

Rmarkdown / compiled html files for human reprogramming dataset analysis

Title: "Human reprogramming roadmap unveils route to induced trophoblast stem cells"

Reference: TBC

single-cell analysis

hrpi_1main.Rmd: Rmarkdown for analysing integrated sn/scRNA-seq of human reprogramming intermediates (click here for compiled html)
hrpi_2geneSig.Rmd: Rmarkdown for identifying gene signatures from snRNA-seq of human reprogramming (click here for compiled html)
hrpi_3monocleCytotrace.Rmd: Rmarkdown for Monocle 3 and CytoTRACE analysis on integrated sn/scRNA-seq (click here for compiled html)
rset_1allAnalysis.Rmd: Rmarkdown for analysing scRNA-seq of RSeT reprogramming (click here for compiled html)
d21i_1allAnalysis.Rmd: Rmarkdown for analysing scRNA-seq of day 21 reprogramming intermediates (click here for compiled html)

bkRNA_1allAnalysis.Rmd: Rmarkdown for analysing bulk RNA-seq of reprogramming intermediates (click here for compiled html)
bkATAC_1allAnalysis.Rmd: Rmarkdown for analysing bulk ATAC-seq of reprogramming intermediates (click here for compiled html)
tscRNA_1allAnalysis.Rmd: Rmarkdown for analysing bulk RNA-seq of iTSC-related samples (click here for compiled html)