forked from ccsb-scripps/AutoDock-GPU
-
Notifications
You must be signed in to change notification settings - Fork 0
/
stringify_ocl_krnls.sh
executable file
·91 lines (77 loc) · 2.95 KB
/
stringify_ocl_krnls.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
#!/bin/bash
# kernel-header files
HEADER_DIR="./common"
IN_HEADER1=$HEADER_DIR/"defines.h"
IN_HEADER2=$HEADER_DIR/"calcenergy_basic.h"
echo " "
echo "Stringified input header files: "
echo $IN_HEADER1
echo $IN_HEADER2
# device source-code folder
KERNEL_DIR="./device"
# non-kernel function files
## AUXI: auxiliary
## ENER: energy
## GRAD: gradient
## ENEGRA: merged energy & gradient
IN_FUNCTION_AUXI=$KERNEL_DIR/"auxiliary_genetic.cl"
IN_FUNCTION_ENER=$KERNEL_DIR/"calcenergy.cl"
IN_FUNCTION_GRAD=$KERNEL_DIR/"calcgradient.cl"
IN_FUNCTION_MERGED_EG=$KERNEL_DIR/"calcMergedEneGra.cl"
# kernel files
## INIT: energy calculation of initial population
## EVAL: evaluation count
## GS_ORIG_GA: Global Search Original Genetic Algorithm
## LS_ORIG_SW: Local Search Original Solis-Wets
## LS_GRAD_{SD | FI | AD}: Local Search Gradient-based {Steepest-Descent | Fire | Ada-Delta}
IN_KERNEL_INIT=$KERNEL_DIR/"kernel1.cl"
IN_KERNEL_EVAL=$KERNEL_DIR/"kernel2.cl"
IN_KERNEL_GS_ORIG_GA=$KERNEL_DIR/"kernel4.cl"
IN_KERNEL_LS_ORIG_SW=$KERNEL_DIR/"kernel3.cl"
IN_KERNEL_LS_GRAD_SD=$KERNEL_DIR/"kernel_sd.cl"
IN_KERNEL_LS_GRAD_FI=$KERNEL_DIR/"kernel_fire.cl"
IN_KERNEL_LS_GRAD_AD=$KERNEL_DIR/"kernel_ad.cl"
echo " "
echo "Stringified input non-kernel files: "
echo $IN_FUNCTION_AUXI
echo $IN_FUNCTION_ENER
echo $IN_FUNCTION_GRAD
echo $IN_FUNCTION_MERGED_EG
echo " "
echo "Stringified input kernel-files: "
echo $IN_KERNEL_INIT
echo $IN_KERNEL_EVAL
echo $IN_KERNEL_GS_ORIG_GA
echo $IN_KERNEL_LS_ORIG_SW
echo $IN_KERNEL_LS_GRAD_SD
echo $IN_KERNEL_LS_GRAD_FI
echo $IN_KERNEL_LS_GRAD_AD
# output file
OUT=host/inc/stringify.h
echo " "
echo "Stringified output file: "
echo $OUT
echo " "
# temporal file
TMP=$KERNEL_DIR/stringify_tmp
echo "// OCLADock: AUTOMATICALLY GENERATED FILE, DO NOT EDIT." >$TMP
echo "#ifndef STRINGIFY_H" >>$TMP
echo "#define STRINGIFY_H" >>$TMP
echo "const char *calcenergy_ocl =" >>$TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_HEADER1 >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_HEADER2 >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_FUNCTION_AUXI >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_FUNCTION_ENER >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_FUNCTION_GRAD >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_FUNCTION_MERGED_EG >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_INIT >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_EVAL >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_GS_ORIG_GA >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_LS_ORIG_SW >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_LS_GRAD_SD >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_LS_GRAD_FI >> $TMP
sed 's/\\/\\\\/g;s/"/\\"/g;s/^/"/;s/$/\\n"/' $IN_KERNEL_LS_GRAD_AD >> $TMP
echo ";" >>$TMP
echo "#endif // End of STRINGIFY_H" >>$TMP
# remove "#include" lines
grep -v '#include' $TMP > $OUT