AMDirT download functionality to download AncientMetagenomeDir tables

[jfy133]

I was about to start writing a tutorial and I realised i'm going to have a to faff around with manually downloading tables before getting started on the tutorial.

What about a command called AMDirT download that allows you to specify

• -table: a given the Dir table
• --type: whether samples or libraries
• --version: the release version

e.g.: AMDirT download --table ancientmetagenome-hostgenome --type samples --version 23.9.0

And then you could have an almost reasonable end-to-end CLI workflow:

AMDirT download  --table ancientmetagenome-hostgenome --type samples --version 23.9.0
grep <some filtering> ancientmetageome-hostgenome_samples.tsv > filtered.tsv
AMDirT convert --eager filtered.tsv ancientmetagenome-hostgenome

or w/e

One question would be should it pull this from a Zenodo archive (more stable) or GitHub (easier to puill with tags)

[maxibor]

Sounds like a good idea !

[maxibor]

Done with #149