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LSTMCRFMLLabeler.cpp
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LSTMCRFMLLabeler.cpp
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/*
* Labeler.cpp
*
* Created on: Mar 16, 2015
* Author: mszhang
*/
#include "LSTMCRFMLLabeler.h"
#include "Argument_helper.h"
Labeler::Labeler() {
// TODO Auto-generated constructor stub
nullkey = "-null-";
unknownkey = "-unknown-";
seperateKey = "#";
}
Labeler::~Labeler() {
// TODO Auto-generated destructor stub
m_classifier.release();
}
int Labeler::createAlphabet(const vector<Instance>& vecInsts) {
cout << "Creating Alphabet..." << endl;
int numInstance;
hash_map<string, int> feature_stat;
hash_map<string, int> word_stat;
vector<hash_map<string, int> > tag_stat;
m_labelAlphabet.clear();
// tag num
int tagNum = vecInsts[0].tagfeatures[0].size();
tag_stat.resize(tagNum);
m_tagAlphabets.resize(tagNum);
for (numInstance = 0; numInstance < vecInsts.size(); numInstance++) {
const Instance *pInstance = &vecInsts[numInstance];
const vector<string> &words = pInstance->words;
const vector<string> &labels = pInstance->labels;
const vector<vector<string> > &sparsefeatures = pInstance->sparsefeatures;
// tag features and check tag numbers
const vector<vector<string> > &tagfeatures = pInstance->tagfeatures;
for (int iter_tag = 0; iter_tag < tagfeatures.size(); iter_tag++) {
assert(tagNum == tagfeatures[iter_tag].size());
}
vector<string> features;
int curInstSize = labels.size();
int labelId;
for (int i = 0; i < curInstSize; ++i) {
labelId = m_labelAlphabet.from_string(labels[i]);
string curword = normalize_to_lowerwithdigit(words[i]);
word_stat[curword]++;
for (int j = 0; j < sparsefeatures[i].size(); j++)
feature_stat[sparsefeatures[i][j]]++;
// tag stat increase
for (int j = 0; j < tagfeatures[i].size(); j++)
tag_stat[j][tagfeatures[i][j]]++;
}
if ((numInstance + 1) % m_options.verboseIter == 0) {
cout << numInstance + 1 << " ";
if ((numInstance + 1) % (40 * m_options.verboseIter) == 0)
cout << std::endl;
cout.flush();
}
if (m_options.maxInstance > 0 && numInstance == m_options.maxInstance)
break;
}
cout << numInstance << " " << endl;
cout << "Label num: " << m_labelAlphabet.size() << endl;
cout << "Total word num: " << word_stat.size() << endl;
cout << "Total feature num: " << feature_stat.size() << endl;
// tag print information
cout << "tag num = " << tagNum << endl;
for (int iter_tag = 0; iter_tag < tagNum; iter_tag++) {
cout << "Total tag " << iter_tag << " num: " << tag_stat[iter_tag].size() << endl;
}
m_featAlphabet.clear();
m_wordAlphabet.clear();
m_wordAlphabet.from_string(nullkey);
m_wordAlphabet.from_string(unknownkey);
//tag apheabet init
for (int i = 0; i < tagNum; i++) {
m_tagAlphabets[i].clear();
m_tagAlphabets[i].from_string(nullkey);
m_tagAlphabets[i].from_string(unknownkey);
}
hash_map<string, int>::iterator feat_iter;
for (feat_iter = feature_stat.begin(); feat_iter != feature_stat.end(); feat_iter++) {
if (feat_iter->second > m_options.featCutOff) {
m_featAlphabet.from_string(feat_iter->first);
}
}
for (feat_iter = word_stat.begin(); feat_iter != word_stat.end(); feat_iter++) {
if (!m_options.wordEmbFineTune || feat_iter->second > m_options.wordCutOff) {
m_wordAlphabet.from_string(feat_iter->first);
}
}
cout << "before tag alphabet line 121" << endl;
// tag cut off, default tagCutOff is zero
for (int i = 0; i < tagNum; i++) {
for (feat_iter = tag_stat[i].begin(); feat_iter != tag_stat[i].end(); feat_iter++) {
if (!m_options.tagEmbFineTune || feat_iter->second > m_options.tagCutOff) {
m_tagAlphabets[i].from_string(feat_iter->first);
}
}
}
cout << "Remain feature num: " << m_featAlphabet.size() << endl;
cout << "Remain words num: " << m_wordAlphabet.size() << endl;
// tag Remain num print
for (int i = 0; i < tagNum; i++) {
cout << "Remain tag " << i << " num: " << m_tagAlphabets[i].size() << endl;
}
m_labelAlphabet.set_fixed_flag(true);
m_featAlphabet.set_fixed_flag(true);
m_wordAlphabet.set_fixed_flag(true);
// tag Alphabet fixed
for (int iter_tag = 0; iter_tag < tagNum; iter_tag++) {
m_tagAlphabets[iter_tag].set_fixed_flag(true);
}
return 0;
}
int Labeler::addTestWordAlpha(const vector<Instance>& vecInsts) {
cout << "Adding word Alphabet..." << endl;
int numInstance;
hash_map<string, int> word_stat;
m_wordAlphabet.set_fixed_flag(false);
for (numInstance = 0; numInstance < vecInsts.size(); numInstance++) {
const Instance *pInstance = &vecInsts[numInstance];
const vector<string> &words = pInstance->words;
int curInstSize = words.size();
for (int i = 0; i < curInstSize; ++i) {
string curword = normalize_to_lowerwithdigit(words[i]);
word_stat[curword]++;
}
if ((numInstance + 1) % m_options.verboseIter == 0) {
cout << numInstance + 1 << " ";
if ((numInstance + 1) % (40 * m_options.verboseIter) == 0)
cout << std::endl;
cout.flush();
}
if (m_options.maxInstance > 0 && numInstance == m_options.maxInstance)
break;
}
hash_map<string, int>::iterator feat_iter;
for (feat_iter = word_stat.begin(); feat_iter != word_stat.end(); feat_iter++) {
if (!m_options.wordEmbFineTune || feat_iter->second > m_options.wordCutOff) {
m_wordAlphabet.from_string(feat_iter->first);
}
}
m_wordAlphabet.set_fixed_flag(true);
return 0;
}
// tag AddTestTagAlpha
int Labeler::addTestTagAlpha(const vector<Instance>& vecInsts) {
cout << "Adding tag Alphabet..." << endl;
int numInstance;
int tagNum = vecInsts[0].tagfeatures[0].size();
vector<hash_map<string, int> > tag_stat(tagNum);
for (int i = 0; i < tagNum; i++) {
m_tagAlphabets[i].set_fixed_flag(false);
}
for (numInstance = 0; numInstance < vecInsts.size(); numInstance++) {
const Instance *pInstance = &vecInsts[numInstance];
const vector<vector<string> > &tagfeatures = pInstance->tagfeatures;
for (int iter_tag = 0; iter_tag < tagfeatures.size(); iter_tag++) {
assert(tagNum == tagfeatures[iter_tag].size());
}
int curInstSize = tagfeatures.size();
for (int i = 0; i < curInstSize; ++i) {
for (int j = 1; j < tagfeatures[i].size(); j++)
tag_stat[j][tagfeatures[i][j]]++;
}
if ((numInstance + 1) % m_options.verboseIter == 0) {
cout << numInstance + 1 << " ";
if ((numInstance + 1) % (40 * m_options.verboseIter) == 0)
cout << std::endl;
cout.flush();
}
if (m_options.maxInstance > 0 && numInstance == m_options.maxInstance)
break;
}
hash_map<string, int>::iterator feat_iter;
for (int i = 0; i < tagNum; i++) {
for (feat_iter = tag_stat[i].begin(); feat_iter != tag_stat[i].end(); feat_iter++) {
if (!m_options.tagEmbFineTune || feat_iter->second > m_options.tagCutOff) {
m_tagAlphabets[i].from_string(feat_iter->first);
}
}
}
for (int i = 0; i < tagNum; i++) {
m_tagAlphabets[i].set_fixed_flag(true);
}
return tagNum;
}
void Labeler::extractFeature(Feature& feat, const Instance* pInstance, int idx) {
feat.clear();
const vector<string>& words = pInstance->words;
int sentsize = words.size();
string curWord = idx >= 0 && idx < sentsize ? normalize_to_lowerwithdigit(words[idx]) : nullkey;
// word features
int unknownId = m_wordAlphabet.from_string(unknownkey);
int curWordId = m_wordAlphabet.from_string(curWord);
if (curWordId >= 0)
feat.words.push_back(curWordId);
else
feat.words.push_back(unknownId);
// tag features
const vector<vector<string> > &tagfeatures = pInstance->tagfeatures;
int tagNum = tagfeatures[idx].size();
for (int i = 0; i < tagNum; i++) {
unknownId = m_tagAlphabets[i].from_string(unknownkey);
int curTagId = m_tagAlphabets[i].from_string(tagfeatures[idx][i]);
if (curTagId >= 0)
feat.tags.push_back(curTagId);
else
feat.tags.push_back(unknownId);
}
const vector<string>& linear_features = pInstance->sparsefeatures[idx];
for (int i = 0; i < linear_features.size(); i++) {
int curFeatId = m_featAlphabet.from_string(linear_features[i]);
if (curFeatId >= 0)
feat.linear_features.push_back(curFeatId);
}
}
void Labeler::convert2Example(const Instance* pInstance, Example& exam) {
exam.clear();
const vector<string> &labels = pInstance->labels;
int curInstSize = labels.size();
for (int i = 0; i < curInstSize; ++i) {
string orcale = labels[i];
int numLabel1s = m_labelAlphabet.size();
vector<int> curlabels, curlabel2s;
for (int j = 0; j < numLabel1s; ++j) {
string str = m_labelAlphabet.from_id(j);
if (str.compare(orcale) == 0)
curlabels.push_back(1);
else
curlabels.push_back(0);
}
exam.m_labels.push_back(curlabels);
Feature feat;
extractFeature(feat, pInstance, i);
exam.m_features.push_back(feat);
}
}
void Labeler::initialExamples(const vector<Instance>& vecInsts, vector<Example>& vecExams) {
int numInstance;
for (numInstance = 0; numInstance < vecInsts.size(); numInstance++) {
const Instance *pInstance = &vecInsts[numInstance];
Example curExam;
convert2Example(pInstance, curExam);
vecExams.push_back(curExam);
if ((numInstance + 1) % m_options.verboseIter == 0) {
cout << numInstance + 1 << " ";
if ((numInstance + 1) % (40 * m_options.verboseIter) == 0)
cout << std::endl;
cout.flush();
}
if (m_options.maxInstance > 0 && numInstance == m_options.maxInstance)
break;
}
cout << numInstance << " " << endl;
}
void Labeler::train(const string& trainFile, const string& devFile, const string& testFile,
const string& modelFile, const string& optionFile, const string& wordEmbFile) {
if (optionFile != "")
m_options.load(optionFile);
m_options.showOptions();
vector<Instance> trainInsts, devInsts, testInsts;
static vector<Instance> decodeInstResults;
static Instance curDecodeInst;
bool bCurIterBetter = false;
m_pipe.readInstances(trainFile, trainInsts, m_options.maxInstance);
if (devFile != "")
m_pipe.readInstances(devFile, devInsts, m_options.maxInstance);
if (testFile != "")
m_pipe.readInstances(testFile, testInsts, m_options.maxInstance);
//Ensure that each file in m_options.testFiles exists!
vector<vector<Instance> > otherInsts(m_options.testFiles.size());
for (int idx = 0; idx < m_options.testFiles.size(); idx++) {
m_pipe.readInstances(m_options.testFiles[idx], otherInsts[idx], m_options.maxInstance);
}
//std::cout << "Training example number: " << trainInsts.size() << std::endl;
//std::cout << "Dev example number: " << trainInsts.size() << std::endl;
//std::cout << "Test example number: " << trainInsts.size() << std::endl;
createAlphabet(trainInsts);
if (!m_options.wordEmbFineTune) {
addTestWordAlpha(devInsts);
addTestWordAlpha(testInsts);
for (int idx = 0; idx < otherInsts.size(); idx++) {
addTestWordAlpha(otherInsts[idx]);
}
cout << "Remain words num: " << m_wordAlphabet.size() << endl;
}
NRMat<dtype> wordEmb;
if (wordEmbFile != "") {
readWordEmbeddings(wordEmbFile, wordEmb);
} else {
wordEmb.resize(m_wordAlphabet.size(), m_options.wordEmbSize);
wordEmb.randu(1000);
}
NRVec<NRMat<dtype> > tagEmbs(m_tagAlphabets.size());
for (int idx = 0; idx < tagEmbs.size(); idx++) {
tagEmbs[idx].resize(m_tagAlphabets[idx].size(), m_options.tagEmbSize);
tagEmbs[idx].randu(1002 + idx);
}
m_classifier.setWordEmbFinetune(m_options.wordEmbFineTune);
m_classifier.init(wordEmb, m_options.wordcontext, tagEmbs, m_labelAlphabet.size(), m_options.rnnHiddenSize, m_options.hiddenSize);
m_classifier.setTagEmbFinetune(m_options.tagEmbFineTune);
m_classifier.setDropValue(m_options.dropProb);
vector<Example> trainExamples, devExamples, testExamples;
initialExamples(trainInsts, trainExamples);
initialExamples(devInsts, devExamples);
initialExamples(testInsts, testExamples);
vector<int> otherInstNums(otherInsts.size());
vector<vector<Example> > otherExamples(otherInsts.size());
for (int idx = 0; idx < otherInsts.size(); idx++) {
initialExamples(otherInsts[idx], otherExamples[idx]);
otherInstNums[idx] = otherExamples[idx].size();
}
dtype bestDIS = 0;
int inputSize = trainExamples.size();
int batchBlock = inputSize / m_options.batchSize;
if (inputSize % m_options.batchSize != 0)
batchBlock++;
srand(0);
std::vector<int> indexes;
for (int i = 0; i < inputSize; ++i)
indexes.push_back(i);
static Metric eval, metric_dev, metric_test;
static vector<Example> subExamples;
int devNum = devExamples.size(), testNum = testExamples.size();
for (int iter = 0; iter < m_options.maxIter; ++iter) {
std::cout << "##### Iteration " << iter << std::endl;
random_shuffle(indexes.begin(), indexes.end());
eval.reset();
for (int updateIter = 0; updateIter < batchBlock; updateIter++) {
subExamples.clear();
int start_pos = updateIter * m_options.batchSize;
int end_pos = (updateIter + 1) * m_options.batchSize;
if (end_pos > inputSize)
end_pos = inputSize;
for (int idy = start_pos; idy < end_pos; idy++) {
subExamples.push_back(trainExamples[indexes[idy]]);
}
int curUpdateIter = iter * batchBlock + updateIter;
dtype cost = m_classifier.process(subExamples, curUpdateIter);
eval.overall_label_count += m_classifier._eval.overall_label_count;
eval.correct_label_count += m_classifier._eval.correct_label_count;
if ((curUpdateIter + 1) % m_options.verboseIter == 0) {
//m_classifier.checkgrads(subExamples, curUpdateIter+1);
std::cout << "current: " << updateIter + 1 << ", total block: " << batchBlock << std::endl;
std::cout << "Cost = " << cost << ", Tag Correct(%) = " << eval.getAccuracy() << std::endl;
}
m_classifier.updateParams(m_options.regParameter, m_options.adaAlpha, m_options.adaEps);
}
if (devNum > 0) {
bCurIterBetter = false;
if (!m_options.outBest.empty())
decodeInstResults.clear();
metric_dev.reset();
for (int idx = 0; idx < devExamples.size(); idx++) {
vector<string> result_labels;
predict(devExamples[idx].m_features, result_labels, devInsts[idx].words);
if (m_options.seg)
devInsts[idx].SegEvaluate(result_labels, metric_dev);
else
devInsts[idx].Evaluate(result_labels, metric_dev);
if (!m_options.outBest.empty()) {
curDecodeInst.copyValuesFrom(devInsts[idx]);
curDecodeInst.assignLabel(result_labels);
decodeInstResults.push_back(curDecodeInst);
}
}
metric_dev.print();
if (!m_options.outBest.empty() && metric_dev.getAccuracy() > bestDIS) {
m_pipe.outputAllInstances(devFile + m_options.outBest, decodeInstResults);
bCurIterBetter = true;
}
if (testNum > 0) {
if (!m_options.outBest.empty())
decodeInstResults.clear();
metric_test.reset();
for (int idx = 0; idx < testExamples.size(); idx++) {
vector<string> result_labels;
predict(testExamples[idx].m_features, result_labels, testInsts[idx].words);
if (m_options.seg)
testInsts[idx].SegEvaluate(result_labels, metric_test);
else
testInsts[idx].Evaluate(result_labels, metric_test);
if (bCurIterBetter && !m_options.outBest.empty()) {
curDecodeInst.copyValuesFrom(testInsts[idx]);
curDecodeInst.assignLabel(result_labels);
decodeInstResults.push_back(curDecodeInst);
}
}
std::cout << "test:" << std::endl;
metric_test.print();
if (!m_options.outBest.empty() && bCurIterBetter) {
m_pipe.outputAllInstances(testFile + m_options.outBest, decodeInstResults);
}
}
for (int idx = 0; idx < otherExamples.size(); idx++) {
std::cout << "processing " << m_options.testFiles[idx] << std::endl;
if (!m_options.outBest.empty())
decodeInstResults.clear();
metric_test.reset();
for (int idy = 0; idy < otherExamples[idx].size(); idy++) {
vector<string> result_labels;
predict(otherExamples[idx][idy].m_features, result_labels, otherInsts[idx][idy].words);
if (m_options.seg)
otherInsts[idx][idy].SegEvaluate(result_labels, metric_test);
else
otherInsts[idx][idy].Evaluate(result_labels, metric_test);
if (bCurIterBetter && !m_options.outBest.empty()) {
curDecodeInst.copyValuesFrom(otherInsts[idx][idy]);
curDecodeInst.assignLabel(result_labels);
decodeInstResults.push_back(curDecodeInst);
}
}
std::cout << "test:" << std::endl;
metric_test.print();
if (!m_options.outBest.empty() && bCurIterBetter) {
m_pipe.outputAllInstances(m_options.testFiles[idx] + m_options.outBest, decodeInstResults);
}
}
if (m_options.saveIntermediate && metric_dev.getAccuracy() > bestDIS) {
std::cout << "Exceeds best previous performance of " << bestDIS << ". Saving model file.." << std::endl;
bestDIS = metric_dev.getAccuracy();
writeModelFile(modelFile);
}
}
// Clear gradients
}
}
int Labeler::predict(const vector<Feature>& features, vector<string>& outputs, const vector<string>& words) {
assert(features.size() == words.size());
vector<int> labelIdx, label2Idx;
m_classifier.predict(features, labelIdx);
outputs.clear();
for (int idx = 0; idx < words.size(); idx++) {
string label = m_labelAlphabet.from_id(labelIdx[idx]);
outputs.push_back(label);
}
return 0;
}
void Labeler::test(const string& testFile, const string& outputFile, const string& modelFile) {
loadModelFile(modelFile);
vector<Instance> testInsts;
m_pipe.readInstances(testFile, testInsts);
vector<Example> testExamples;
initialExamples(testInsts, testExamples);
int testNum = testExamples.size();
vector<Instance> testInstResults;
Metric metric_test;
metric_test.reset();
for (int idx = 0; idx < testExamples.size(); idx++) {
vector<string> result_labels;
predict(testExamples[idx].m_features, result_labels, testInsts[idx].words);
testInsts[idx].SegEvaluate(result_labels, metric_test);
Instance curResultInst;
curResultInst.copyValuesFrom(testInsts[idx]);
testInstResults.push_back(curResultInst);
}
std::cout << "test:" << std::endl;
metric_test.print();
m_pipe.outputAllInstances(outputFile, testInstResults);
}
void Labeler::readWordEmbeddings(const string& inFile, NRMat<dtype>& wordEmb) {
static ifstream inf;
if (inf.is_open()) {
inf.close();
inf.clear();
}
inf.open(inFile.c_str());
static string strLine, curWord;
static int wordId;
//find the first line, decide the wordDim;
while (1) {
if (!my_getline(inf, strLine)) {
break;
}
if (!strLine.empty())
break;
}
int unknownId = m_wordAlphabet.from_string(unknownkey);
static vector<string> vecInfo;
split_bychar(strLine, vecInfo, ' ');
int wordDim = vecInfo.size() - 1;
std::cout << "word embedding dim is " << wordDim << std::endl;
m_options.wordEmbSize = wordDim;
wordEmb.resize(m_wordAlphabet.size(), wordDim);
wordEmb = 0.0;
curWord = normalize_to_lowerwithdigit(vecInfo[0]);
wordId = m_wordAlphabet.from_string(curWord);
hash_set<int> indexers;
dtype sum[wordDim];
int count = 0;
bool bHasUnknown = false;
if (wordId >= 0) {
count++;
if (unknownId == wordId)
bHasUnknown = true;
indexers.insert(wordId);
for (int idx = 0; idx < wordDim; idx++) {
dtype curValue = atof(vecInfo[idx + 1].c_str());
sum[idx] = curValue;
wordEmb[wordId][idx] = curValue;
}
} else {
for (int idx = 0; idx < wordDim; idx++) {
sum[idx] = 0.0;
}
}
while (1) {
if (!my_getline(inf, strLine)) {
break;
}
if (strLine.empty())
continue;
split_bychar(strLine, vecInfo, ' ');
if (vecInfo.size() != wordDim + 1) {
std::cout << "error embedding file" << std::endl;
}
curWord = normalize_to_lowerwithdigit(vecInfo[0]);
wordId = m_wordAlphabet.from_string(curWord);
if (wordId >= 0) {
count++;
if (unknownId == wordId)
bHasUnknown = true;
indexers.insert(wordId);
for (int idx = 0; idx < wordDim; idx++) {
dtype curValue = atof(vecInfo[idx + 1].c_str());
sum[idx] += curValue;
wordEmb[wordId][idx] += curValue;
}
}
}
if (!bHasUnknown) {
for (int idx = 0; idx < wordDim; idx++) {
wordEmb[unknownId][idx] = sum[idx] / count;
}
count++;
std::cout << unknownkey << " not found, using averaged value to initialize." << std::endl;
}
int oovWords = 0;
int totalWords = 0;
for (int id = 0; id < m_wordAlphabet.size(); id++) {
if (indexers.find(id) == indexers.end()) {
oovWords++;
for (int idx = 0; idx < wordDim; idx++) {
wordEmb[id][idx] = wordEmb[unknownId][idx];
}
}
totalWords++;
}
std::cout << "OOV num is " << oovWords << ", total num is " << m_wordAlphabet.size() << ", embedding oov ratio is " << oovWords * 1.0 / m_wordAlphabet.size()
<< std::endl;
}
void Labeler::loadModelFile(const string& inputModelFile) {
}
void Labeler::writeModelFile(const string& outputModelFile) {
}
int main(int argc, char* argv[]) {
#if USE_CUDA==1
InitTensorEngine();
#else
InitTensorEngine<cpu>();
#endif
std::string trainFile = "", devFile = "", testFile = "", modelFile = "";
std::string wordEmbFile = "", optionFile = "";
std::string outputFile = "";
bool bTrain = false;
dsr::Argument_helper ah;
ah.new_flag("l", "learn", "train or test", bTrain);
ah.new_named_string("train", "trainCorpus", "named_string",
"training corpus to train a model, must when training", trainFile);
ah.new_named_string("dev", "devCorpus", "named_string",
"development corpus to train a model, optional when training",
devFile);
ah.new_named_string("test", "testCorpus", "named_string",
"testing corpus to train a model or input file to test a model, optional when training and must when testing",
testFile);
ah.new_named_string("model", "modelFile", "named_string",
"model file, must when training and testing", modelFile);
ah.new_named_string("word", "wordEmbFile", "named_string",
"pretrained word embedding file to train a model, optional when training",
wordEmbFile);
ah.new_named_string("option", "optionFile", "named_string",
"option file to train a model, optional when training", optionFile);
ah.new_named_string("output", "outputFile", "named_string",
"output file to test, must when testing", outputFile);
ah.process(argc, argv);
Labeler tagger;
if (bTrain) {
tagger.train(trainFile, devFile, testFile, modelFile, optionFile, wordEmbFile);
} else {
tagger.test(testFile, outputFile, modelFile);
}
//test(argv);
//ah.write_values(std::cout);
#if USE_CUDA==1
ShutdownTensorEngine();
#else
ShutdownTensorEngine<cpu>();
#endif
}