diff --git a/.github/workflows/rw-deploy.yaml b/.github/workflows/rw-deploy.yaml
index bc1103b..c86e5d8 100644
--- a/.github/workflows/rw-deploy.yaml
+++ b/.github/workflows/rw-deploy.yaml
@@ -53,17 +53,17 @@ jobs:
       - name: Deploy common configuration
         run: >
           pipenv run sceptre --var-file=src/sceptre/variables/${{ inputs.sceptre-suffix }}.yaml
-          launch common --yes
+          launch common --yes --prune
 
       - name: Deploy infrastructure configuration
         run: >
           pipenv run sceptre --var-file=src/sceptre/variables/${{ inputs.sceptre-suffix }}.yaml
-          launch infra-${{ inputs.sceptre-suffix }} --yes
+          launch infra-${{ inputs.sceptre-suffix }} --yes --prune
 
       - name: Deploy projects configuration
         run: >
           pipenv run sceptre --var-file=src/sceptre/variables/${{ inputs.sceptre-suffix }}.yaml
-          launch projects-${{ inputs.sceptre-suffix }} --yes
+          launch projects-${{ inputs.sceptre-suffix }} --yes --prune
 
       - name: Wait for Nextflow Tower to be up
         uses: nev7n/wait_for_response@v1