From 13b155d659a830d1b3ebf02a2534e9ad73cbbb92 Mon Sep 17 00:00:00 2001
From: Meghasyam <meghasyam@sagebase.org>
Date: Thu, 14 Nov 2024 19:10:18 +0000
Subject: [PATCH 1/2] Change 'RemFragmentationIndex' to 'RemFragmentationInd'
 to get around CONCEPT_CD column having a max char limit of 50

---
 scripts/process-data/fitbitsleeplogs.R | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/scripts/process-data/fitbitsleeplogs.R b/scripts/process-data/fitbitsleeplogs.R
index 255a39f..6f7af9a 100644
--- a/scripts/process-data/fitbitsleeplogs.R
+++ b/scripts/process-data/fitbitsleeplogs.R
@@ -275,11 +275,11 @@ rem_fragmentation_index <-
             by = join_by("ParticipantIdentifier", "LogId")) %>% 
   filter(SleepLevelRem > 0) %>%
   mutate(SleepLevelRem = as.numeric(SleepLevelRem),
-         remFragmentationIndex = remTransitions/(SleepLevelRem/60)) %>% 
-  select(ParticipantIdentifier, LogId, remFragmentationIndex)
+         remFragmentationInd = remTransitions/(SleepLevelRem/60)) %>% 
+  select(ParticipantIdentifier, LogId, remFragmentationInd)
 
 # Merge the original df with the numawakenings, remOnsetLatency, and
-# remFragmentationIndex dfs to create a united df
+# remFragmentationInd dfs to create a united df
 df_joined <- 
   left_join(x = df, y = numawakenings_logid_filtered, by = join_by("ParticipantIdentifier", "LogId")) %>% 
   left_join(y = rem_onset_latency, by = join_by("ParticipantIdentifier", "LogId")) %>% 

From 28ae8af6b7b9b2297ae2ef5473301db76001c8ab Mon Sep 17 00:00:00 2001
From: itismeghasyam <meghasyam@sagebase.org>
Date: Sat, 23 Nov 2024 01:33:21 +0000
Subject: [PATCH 2/2] Change params to match 2024-11-12 version

---
 config/config.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/config/config.yml b/config/config.yml
index bc42486..8747260 100644
--- a/config/config.yml
+++ b/config/config.yml
@@ -3,7 +3,7 @@ default:
 
 staging:
   ontologyFileID: syn52050046
-  parquetDirID: syn61250818
+  parquetDirID: syn64135308
   concept_replacements: !expr c("mins" = "minutes",
                                 "avghr" = "averageheartrate",
                                 "spo2" = "spo2_",
@@ -15,7 +15,7 @@ staging:
   concept_filter_col: CONCEPT_CD
   synFolderID: syn52504335
   s3bucket: recover-main-project
-  s3basekey: main/archive/2024-06-13/
+  s3basekey: main/archive/2024-11-12/
   selectedVarsFileID: syn53503994
   outputConceptsDir: ./temp-output-concepts
   tempOutputConceptSynID: syn53822708
@@ -26,5 +26,5 @@ prod:
 
 internal:
   inherits: staging
-  parquetDirID: syn63135213
-  s3basekey: staging/2024-09-10
+  parquetDirID: syn64050498
+  s3basekey: staging/2024-11-12