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The solve function's save_noise keyword defaults incorrectly to false and ignores saveat keyword #573

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henhen724 opened this issue Jul 23, 2024 · 1 comment
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@henhen724
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Describe the bug 🐞
The docs describe the save_noise keyword for the solve function in following way:

save_noise: Determines whether the values of W are saved whenever the timeseries is saved. Defaults to true.

Firstly, when save_noise is not set, it defaults to false instead of true. As you can see in the example below, without save noise set it only saves the start and end points to the solution.

Secondly, when saveat is set to a time longer than the timestep, the noise process will save the noise at single every time step instead of when the timeseries is saved, which does not match the description above.

Expected behavior
Without setting save_noise, the solution object should contain a sol.W which is saved at the exact same timesteps as sol.t and sol.u.

Minimal Reproducible Examples 👇
Example 1: incorrectly defaults to false

using DifferentialEquations

function ou!(du, u, p, t)
    du[1] = -10.0 * u[1]
end

function σ_ou!(du, u, p, t)
    du[1] = 3.0
end

prob_ou = SDEProblem(ou!, σ_ou!, [1.0], (0.0, 10.0))
sol = solve(prob_ou, saveat=0.1);

println("Solution length: $(length(sol.u))  Noise Length: $(length(sol.W))")

Solution length: 101 Noise Length: 2

Example 2: saves every timestep instead of at the timeseries

using DifferentialEquations

function ou!(du, u, p, t)
    du[1] = -10.0 * u[1]
end

function σ_ou!(du, u, p, t)
    du[1] = 3.0
end

prob_ou = SDEProblem(ou!, σ_ou!, [1.0], (0.0, 10.0))
sol = solve(prob_ou, saveat=0.1, save_noise=true);

println("Solution length: $(length(sol.u))  Noise Length: $(length(sol.W))")

Solution length: 101 Noise Length: 24120

Environment (please complete the following information):

  • Output of using Pkg; Pkg.status()
julia> using Pkg; Pkg.status()
Status `\\levlabserver2.stanford.edu\commondrive\Users\hshunt\LabNotebooks\BugEnv\Project.toml`
  [0c46a032] DifferentialEquations v7.13.0
  • Output of using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
julia> using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Status `\\levlabserver2.stanford.edu\commondrive\Users\hshunt\LabNotebooks\BugEnv\Manifest.toml`
  [47edcb42] ADTypes v1.6.1
  [7d9f7c33] Accessors v0.1.36
  [79e6a3ab] Adapt v4.0.4
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.12.0
  [4c555306] ArrayLayouts v1.10.2
  [aae01518] BandedMatrices v1.7.2
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [764a87c0] BoundaryValueDiffEq v5.9.0
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [49dc2e85] Calculus v0.5.1
  [d360d2e6] ChainRulesCore v1.24.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.0
  [f70d9fcc] CommonWorldInvalidations v1.0.0
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  [459566f4] DiffEqCallbacks v3.6.2
  [77a26b50] DiffEqNoiseProcess v5.22.0
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  [0c46a032] DifferentialEquations v7.13.0
  [a0c0ee7d] DifferentiationInterface v0.5.9
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  [9aa1b823] FastClosures v0.3.2
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  [6a86dc24] FiniteDiff v2.23.1
  [f6369f11] ForwardDiff v0.10.36
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  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [d9f16b24] Functors v0.4.11
  [46192b85] GPUArraysCore v0.1.6
  [c145ed77] GenericSchur v0.5.4
  [86223c79] Graphs v1.11.2
  [3e5b6fbb] HostCPUFeatures v0.1.17
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  [92d709cd] IrrationalConstants v0.2.2
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.5.0
  [ccbc3e58] JumpProcesses v9.11.1
  [ef3ab10e] KLU v0.6.0
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  [7ed4a6bd] LinearSolve v2.30.2
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  [1d0040c9] PolyesterWeave v0.2.2
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  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.0
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  [79098fc4] Rmath v0.7.1
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  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
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  [9672c7b4] SteadyStateDiffEq v2.2.0
  [789caeaf] StochasticDiffEq v6.66.0
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  [856f044c] MKL_jll v2024.2.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [f50d1b31] Rmath_jll v0.4.2+0
⌅ [fb77eaff] Sundials_jll v5.2.2+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8ba89e20] Distributed
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [9fa8497b] Future
  [b77e0a4c] InteractiveUtils
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  [b27032c2] LibCURL v0.6.4
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  [3fa0cd96] REPL
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  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.10.0
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  [8dfed614] Test
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  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.1.0+0
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  [83775a58] Zlib_jll v1.2.13+1
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  [3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
  • Output of versioninfo()
Julia Version 1.10.2
Commit bd47eca2c8 (2024-03-01 10:14 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Windows (x86_64-w64-mingw32)
  CPU: 8 × Intel(R) Core(TM) i7-6700K CPU @ 4.00GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, skylake)
Threads: 1 default, 0 interactive, 1 GC (on 8 virtual cores)
@henhen724 henhen724 added the bug label Jul 23, 2024
@ChrisRackauckas
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save_noise: Determines whether the values of W are saved whenever the timeseries is saved. Defaults to true.

Yeah that's a typo in the docs. It's intended to default to false because most of the time it's not needed and it's expensive to save. That was a simple fix SciML/DiffEqDocs.jl#744.

Example 2: saves every timestep instead of at the timeseries

Yes that's not intended, moving to StocahsticDiffEq.jl

@ChrisRackauckas ChrisRackauckas transferred this issue from SciML/DifferentialEquations.jl Jul 23, 2024
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