Dockerfile-dev

# Get the rocker image we want
FROM rocker/geospatial:latest

# copy the whole repo to the image
ADD . /home/rstudio/TOPSTSCHOOL-MODULE-1-WATER

## give the rstudio user permissions on these files
RUN chown -R rstudio /home/rstudio/TOPSTSCHOOL-MODULE-1-WATER

# Add packages not part of rocker/geospatial
RUN Rscript -e "install.packages('cubelyr')"
RUN Rscript -e "install.packages('exactextractr')"
RUN Rscript -e "install.packages('basemaps')"
RUN Rscript -e "install.packages('shiny')"

# Python Environment
## python and pip
RUN apt-get update
RUN apt-get install -y python3
RUN apt-get install -y python3-pip
## python geospatial
RUN pip install geopandas pyproj shapely xarray rioxarray 
RUN pip install rasterio netcdf4 h5netcdf dask bottleneck 
RUN pip install numpy pandas nc-time-axis requests
## exactextract
### dependencies
RUN pip install CMake pybind11 GEOS
### latest on git
RUN pip install git+https://github.com/isciences/exactextract.git

CMD ["/init"]